[Freesurfer] Error finding glmdir with mri_glmfit-sim

2017-11-24 Thread Nick Corriveau-Lecavalier
analysis file. The weird thing is, I ran the very same analysis a few months ago with fewer subjects and it ran well. Can you help me with this? Nick Corriveau-Lecavalier Candidat au Ph.D. recherche/intervention, option neuropsychologie clinique Président de l'Association étudiante des cycles

Re: [Freesurfer] GLM error - cannot read fsgd file for reading

2017-08-10 Thread Nick Corriveau-Lecavalier
ect? > > > If it can help, here's what my fsgd file looks likes: > > > GroupDescriptorFile 1 > Title OSGM > Class Control > Class SCD > Class MCI > Variables > Input 3431566 CTL > Input 3514091 CTL > Input 4051959 CTL > Input 4344061 CTL > Input

[Freesurfer] GLM error - cannot read fsgd file for reading

2017-08-09 Thread Nick Corriveau-Lecavalier
Input 6258913 SCD Input 6274286 SCD Input 6334263 SCD Input 6417837 SCD Input 6427603 SCD Input 7435733 SCD Input 7485585 SCD Input 7712552 SCD Input 8827943 SCD Input 8980899 SCD Regards, Nick Corriveau-Lecavalier, B.Sc. (Hons) Candidat au Ph.D. recherche/intervention, option neuropsychologie

[Freesurfer] From structural ROIs to functional data

2016-10-04 Thread Nick Corriveau Lecavalier
) so I can get the functional beta values in this ROI? I tried to make functional ROIs with MarsBar by taking the coordinates of the thickness clusters, but the size and shape of those ROIs are kind of arbitrary. Do you have anything to suggest? Nick Corriveau-Lecavalier, B.Sc. (Hons

[Freesurfer] mris_calc cluster infos

2016-09-18 Thread Nick Corriveau Lecavalier
a .log as output, I can't compute mris_glmfit-sim on it and I cannot get any infos on the cluster summary. Regards, Nick Corriveau-Lecavalier, B.Sc. (Hons.) Étudiant au Ph.D. recherche/intervention, option neuropsychologie clinique Coordonateur à la recherche, Association étudiante des cycles

[Freesurfer] Paired analysis - mismatch between matrix and contrast

2016-09-16 Thread Nick Corriveau Lecavalier
files has 2 columns, while the matrix has 44. What did I go wrong? I join with this message the log, fsgd and contrasts files. Thank you! Nick Corriveau-Lecavalier, B.Sc. (Hons.) Étudiant au Ph.D. recherche/intervention, option neuropsychologie clinique Coordonateur à la recherche, Association

Re: [Freesurfer] qcache for qdec longitudinal analysis

2016-08-23 Thread Nick Corriveau Lecavalier
Thank you very much. I will be looking forward to this. Nick Corriveau-Lecavalier ?tudiant au Ph.D. recherche/intervention, option neuropsychologie clinique Coordonateur ? la recherche, Association ?tudiante des cycles sup?rieurs en psychologie de l'Universit? de Montr?al (A?CSPUM) Universit? de

[Freesurfer] qcache for qdec longitudinal analysis

2016-08-22 Thread Nick Corriveau Lecavalier
to run all of my subjects all over again adding -qcache? Thank you very much, Nick Corriveau-Lecavalier, B.Sc. (Hons.) Étudiant au Ph.D. recherche/intervention, option neuropsychologie clinique Coordonateur à la recherche, Association étudiante des cycles supérieurs en psychologie de l'Université