[Freesurfer] recon.all strange run time

2018-06-28 Thread Ottavio Morciano
External Email - Use Caution Hi!I have a macbook pro MY 2014 with a Intel Core i7(quad core,2.7 ghz) and 16 gb of ram with El Capitan.This Macbook to run recon-all it takes 47 hours with -openmp 8 flag. A Dell with Intel Core i7 3632Q,8 GB RAM DDR3 1600mhz with Linux takes 8

Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-27 Thread Ottavio Morciano
xport SUBJECTS_DIR=/home/my/study/fs60/MRIstudy/sMRI/native > > cd /home/my/MRIdata/sMRI/native > > ls *.nii | parallel --jobs 8 recon-all -all -s {.} -i {} > > cheers, > > Giuseppe > > On 25/06/2018 23:49, Ottavio Morciano wrote: > > External Emai

[Freesurfer] Recon-all run time too long

2018-06-27 Thread Ottavio Morciano
External Email - Use Caution Hi!I have a macbook pro MY 2014 with a Intel Core i7(quad core,2.7 ghz) and 16 gb of ram with El Capitan.This Macbook to run recon-all it takes 47 hours with -openmp 8 flag. A Dell with Intel Core i7 3632Q,8 GB RAM DDR3 1600mhz with Linux takes 8

Re: [Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-25 Thread Ottavio Morciano
ithout using -openmp). > > > On 06/25/2018 05:34 PM, Ottavio Morciano wrote: > > > > > > Hi!I'am a student of medicine in Foggia,Italy.To elaborate a single > > .nii file for a single subjects i use "recon-all -i (name of .nii > > file) -s (name of subject

[Freesurfer] Best way to elaborate multiple .nii file for multiple subjects

2018-06-25 Thread Ottavio Morciano
External Email - Use Caution Hi!I'am a student of medicine in Foggia,Italy.To elaborate a single .nii file for a single subjects i use "recon-all -i (name of .nii file) -s (name of subjects) -all -openmp 8(i have 8 core)"and to finish the work is necessary 8 hours. Now i want