Hi,
Is there any way in FSFAST to use caudate as a seed for connectivity analysis?
I was checking to see if it had a seg id for which I could run fc-seed-config,
but it only had ids for caudate intensity abnormalities.
Thank you!
Best,
Talia
___
could convert the lta
files to register.dat files
On 07/06/2016 02:02 PM, Raney, Talia L. wrote:
> Hmm, it says that there is one frame in each of the subjects.
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mris_preproc subject-volume mismatch
It must be that one of the ces files has multiple frames. Try running
mri_info --nframes ces.nii.gz
on all of the ces files to see how many frames are in each
On 07/06/2016 01:39 PM, Raney, Talia L. wrote
, Talia L. wrote:
> Hi FreeSurfer users,
> I'm trying to use mri-preproc to do a group fMRI analysis(based on the
> tutorial). However, I keep getting an error that the number of input volumes
> does not equal number of subjects. It seems one volume is counted as 4
> subjects. I'm
Hi FreeSurfer users,
I'm trying to use mri-preproc to do a group fMRI analysis(based on the
tutorial). However, I keep getting an error that the number of input volumes
does not equal number of subjects. It seems one volume is counted as 4
subjects. I'm wondering what the command determines to
g the output.
On 06/15/2016 04:36 PM, Raney, Talia L. wrote:
> My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run
> $run_num restingstate nii.gz f.nii.gz and the output is
> ---
N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Wednesday, June 15, 2016 4:08 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Found 0 unique series
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
> Hi FreeSurfer us
Hi FreeSurfer users,
I've been running dcmunpack and I get an error that said Found 0 unique series,
even though it has dicom files. What does this mean and what could I do to fix
the problem?
Best,
Talia
___
Freesurfer mailing list
. you should be using
selxavg3-sess
On 06/01/2016 03:45 PM, Raney, Talia L. wrote:
> Okay, the thing is that when I remove the no-con flag I get this error
> "ERROR: the design type of this analysis is notask
>selxavg-sess can only be used to analyse event-related and blocked"
01/2016 02:24 PM, Raney, Talia L. wrote:
> Hi FreeSurfer users,
> I have some resting state data that I preprocessed and conducted first level
> analyses using the flag -no-con-ok. Since no ces.nii.gz or sig.nii.gz is
> createdcomes up because there is no contrast, I'm wond
Hi FreeSurfer users,
I have some resting state data that I preprocessed and conducted first level
analyses using the flag -no-con-ok. Since no ces.nii.gz or sig.nii.gz is
createdcomes up because there is no contrast, I'm wondering if it's possible to
conduct functional ROI analyses with the
as unable to find a definitive fix for this error.
2016-04-15 14:09 GMT+02:00 Raney, Talia L.
<tra...@partners.org<mailto:tra...@partners.org>>:
Hi Julio,
In the past I received this error because the subject was not preprocessed
correctly. Make sure you have a link to the subject
Hi all,
I'm trying to do FC connectivity analysis using the dorsalateral prefrontal
cortex as a seed. I checked the text file
$FREESURFER_HOME/average/colortable_desikan_killiany.txt and it looks like
DLPFC is not listed as a possible structure to do the FC analysis. I attempted
to use
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