[Freesurfer] Average-subject space

2019-01-30 Thread Sofia Rodriguez Penuela
External Email - Use Caution Hi Freesurfer team! How can I export the volumes of each subject to .nii in the space of the average subject? Thank you. Sofía Rodríguez Peñuela.___ Freesurfer mailing list

Re: [Freesurfer] Did not find any volume info. Warning: MatrixInverse failed

2018-09-07 Thread Sofia Rodriguez Penuela
> Message: 2 > Date: Thu, 6 Sep 2018 11:29:32 -0400 > From: Ruopeng Wang > Subject: Re: [Freesurfer] Did not find any volume info. Warning: > MatrixInverse failed > To: freesurfer@nmr.mgh.harvard.edu > Message-ID: <57736545-c834-b94f-8fe1-289f6a6d0...@nmr.mgh.harvard.edu>

[Freesurfer] Convert to .nii in the native space including all changes in the pial surfaces

2018-07-24 Thread Sofia Rodriguez Penuela
External Email - Use Caution Hello team, We have first fixed non-cortex voxels in the pial surface using the brainmask.mgz volume, and we next corrected pial surfaces that mistakenly included cerebellum by creating a copy of 'brain.finalsurfs.mgz' named

[Freesurfer] [Re] medial wall label in Freesurfer 6

2017-11-28 Thread Sofia Rodriguez Penuela
Hi, User M del Mar and me belong to same investigation group, so the problem is common. We have 116 subjects and we detected this trouble. However, we tried to repeat the make_average_subject command using a subgroup (only 60 subjects) and label files were correctly created. Maybe, number of

[Freesurfer] medial wall label in Freesurfer 6

2017-11-27 Thread Sofia Rodriguez Penuela
Hello, when using "make_average_subject" in Freesurfer 6, we have noted that the medial wall label only contains 1 vertex leading, after applying "mri_glmfit, to significant results in regions of the medial wall. This problem didn't appear in Fresurfer 5.3 Is there something different with the

[Freesurfer] medial wall label in Freesurfer 6

2017-11-23 Thread Sofia Rodriguez Penuela
Hello, when using "make_average_subject" in Freesurfer, we have noted that the medial wall label only contains 1 vertex leading, after applying "mri_glmfit, to significant results in regions of the medial wall. This problem didn't appear in Fresurfer 5.3 Is there something different with the