[Freesurfer] intracranial volume in qdec

2010-08-02 Thread York, Philip
Hi experts, I was wondering it is possible to account for total intracranial volume in qdec statistical calculations, and if so, where do I find that under the 'general stats data tables' Thanks, Philip York UCDenver Radiology ___ Freesurfer mailing

[Freesurfer] Error in Recon-all -all

2010-07-26 Thread York, Philip
Dear Freesurfer experts, one of my recent recon-all processes exited with errors as seen here mri_ca_label GCA sequential renormalization: label 28 not consistently computed. not using caudate to estimate GM means setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 estimating

Re: [Freesurfer] Error in Recon-all -all

2010-07-26 Thread York, Philip
I am running v4.5.0 On Jul 26, 2010, at 8:49 AM, Bruce Fischl wrote: Hi Philip, what version were you running? I think Martin Reuter fixed this bug. cheers Bruce On Mon, 26 Jul 2010, York, Philip wrote: Dear Freesurfer experts, one of my recent recon-all processes exited

[Freesurfer] recon for pial and wm edits

2010-06-28 Thread York, Philip
Hi all, I am currently finishing a number of wm and pial edits. Is there a command to string both autorecon2-cp and autorecon2-pial together? Thanks, Philip ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Control point editing

2010-06-21 Thread York, Philip
Hello, I have just edited 12 control points in the OFC/Gyrus rectus area of one of our subjects. I added 12 control points, all to regions of WM that were below 110 and I was very pleased with the output for that region once I ran -autorecon2-cp -autorecon3. However, this resulted in the