I have three scans that exit with errors that I cannot comprehend. The first
two indicate memory and bus failures, so I thought maybe my computer had choked
during processing, but after running again I received the same errors. The
third is too cryptic for me to understand at all. Can anyone
According to the tutorial at
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEdits, we should
be looking for these holes in the white surface, but when I looked at my
processed data using tkmedit SUBJECT brainmask.mgz -aux wm.mgz -surfs, I saw
many such holes. They seem to be
After reading the tutorial at
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach, I understand
that I should be using
tkregister2 --mgz --s SUBJECT --fstal --surf orig when editing my talairach
transform. I have been somewhat successful at this, but I was wondering if
there might
I am having trouble with 2 scans that exit with errors. Both have the same
error:
talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED***
This is actually preceded by a message stating that talairach.xfm already
exists and will not be copied. If I use the --clean-tal
Hello,
I am working on comparing hand-drawn subcortical volumes to those output
automatically by FreeSurfer. While reading about the segmentation process on
the wiki, I came across this line:
The final segmentation is based on both a subject-independent probabilistic
atlas and