Re: [Freesurfer] Surface Errors

2018-02-26 Thread Emily Schwartz
Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, February 26, 2018 1:27 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Surface Errors Hi Emily, I looked over these subjects. While a few of the flagged spots are not really problems, most of them are true inaccuracies. I think

Re: [Freesurfer] Surface Errors

2018-02-26 Thread Douglas N Greve
Thanks! > > Emily > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, February 22, 2018 11:55 AM > To: freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Surface Errors

2018-02-22 Thread Emily Schwartz
] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Thursday, February 22, 2018 11:55 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Surface Errors got em. can you send me coordinates (col, row,slice) where you are seeing the errors? You can also create a point set

Re: [Freesurfer] Surface Errors

2018-02-22 Thread Douglas N Greve
, >>> >>> Emily >>> ____________________ >>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve >>> [gr...@nm

Re: [Freesurfer] Surface Errors

2018-02-22 Thread Emily Schwartz
:52 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Surface Errors yes, filedrop should be find thanks On 02/21/2018 04:44 PM, Emily Schwartz wrote: > Hi Doug, > > I definitely can. I cannot use FTP from this computer for some reason. Can I > upload it via filedrop

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Douglas N Greve
Thanks, > > Emily > > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Wednesday, February 21, 2018 4:29 PM > To: freesurfer@nmr.mgh.harvard.edu &g

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Emily Schwartz
] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Wednesday, February 21, 2018 4:29 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Surface Errors I'm a little surprised you are getting them so frequently. Can you upload a couple of subjects so I can take a look? On 02

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Douglas N Greve
>> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl >> [fis...@nmr.mgh.harvard.edu] >> Sent: Wednesday, February 21, 2018 10:23 AM >> To: Freesurfer support list >> Subject: Re: [Freesurfer] Surfa

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Emily Schwartz
Subject: Re: [Freesurfer] Surface Errors Hi Emily it is a segmentation error, but it's a pretty small one. It will mess up the thickness in a region a few mm^2. You could fix it by editing the wm.mgz if you really care about that spot cheers Bruce On Wed, 21 Feb 2018, Emily Schwartz wrote: >

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Emily Schwartz
] Sent: Wednesday, February 21, 2018 2:18 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Surface Errors btw, what verions of FS are you using? On 02/21/2018 01:25 PM, Emily Schwartz wrote: > Got it, thank you so much! > > Best,

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Douglas N Greve
n behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Wednesday, February 21, 2018 10:23 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Surface Errors > > Hi Emily > > it is a segmentation error, but it's a pretty small one. It will mess up >

Re: [Freesurfer] Surface Errors

2018-02-21 Thread Bruce Fischl
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Tuesday, February 20, 2018 4:59 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Surface Errors > > sorry, what kind of errors? I could not really tell from

Re: [Freesurfer] Surface Errors

2018-02-20 Thread Douglas N Greve
sorry, what kind of errors? I could not really tell from the images what the problem was On 02/20/2018 10:22 AM, Emily Schwartz wrote: > Hi FreeSurfer community, > > I am working on elderly subjects and have had this kind of surface error > quite often in different locations. Usually, it's