Re: [Freesurfer] [External] Re: Intensity inhomogeneity messing with the wm.mgz

2020-05-02 Thread Bruce Fischl
:28 PM To: Freesurfer support list Subject: Re: [External] Re: [Freesurfer] Intensity inhomogeneity messing with the wm.mgz Hi, Thanks for the clarification. From my understanding, control points are used to grab regions that should be white matter, rather than remove regions that aren't white

Re: [Freesurfer] [External] Re: Intensity inhomogeneity messing with the wm.mgz

2020-05-02 Thread Zeng, Victor (BIDMC - Keshavan - Psychiatry)
list Subject: Re: [External] Re: [Freesurfer] Intensity inhomogeneity messing with the wm.mgz Hi all, I was doing a little bit more researching. Could you just fix this sort of issue by editing the aparc.auto.mgz and changing the label from Left/Right-Cerebral-White-Matter to Left/Right

Re: [Freesurfer] [External] Re: Intensity inhomogeneity messing with the wm.mgz

2020-05-02 Thread Zeng, Victor (BIDMC - Keshavan - Psychiatry)
-- From: Zeng,Victor (BIDMC - Keshavan - Psychiatry) Sent: Sunday, April 26, 2020 7:28 PM To: Freesurfer support list Subject: Re: [External] Re: [Freesurfer] Intensity inhomogeneity messing with the wm.mgz Hi, Thanks for the clarification. From my understanding

Re: [Freesurfer] [External] Re: Intensity inhomogeneity messing with the wm.mgz

2020-04-26 Thread Bruce Fischl
alf of Bruce Fischl Sent: Sunday, April 26, 2020 12:03 PM To: Freesurfer support list Subject: [External] Re: [Freesurfer] Intensity inhomogeneity messing with the wm.mgz Hi Victor the best way to remove intensity inhomogeneities is with control points usually. The wm.mgz gives us an init

Re: [Freesurfer] [External] Re: Intensity inhomogeneity messing with the wm.mgz

2020-04-26 Thread Zeng, Victor (BIDMC - Keshavan - Psychiatry)
Israel Deaconess Medical Center Keshavan Lab -- From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Sunday, April 26, 2020 12:03 PM To: Freesurfer support list Subject: [External] Re: [Freesurfer] Intensity inhomogeneity messing