Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-06 Thread Soichi Hayashi
ard.edu] on behalf of Hoopes, Andrew [ > ahoo...@mgh.harvard.edu] > > Sent: Monday, August 05, 2019 12:25 PM > > To: Freesurfer support list > > Subject: Re: [Freesurfer] [External] Re: mri_deface fails on pediatric > brain > > > > Hi Soichi, you can update mri_deface with

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-05 Thread Bruce Fischl
surfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Hoopes, Andrew > [ahoo...@mgh.harvard.edu] > Sent: Monday, August 05, 2019 12:25 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] [External] Re: mri_deface fails on pediatric b

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-05 Thread Brian Biekman
From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Hoopes, Andrew [ahoo...@mgh.harvard.edu] Sent: Monday, August 05, 2019 12:25 PM To: Freesurfer support list Subject: Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain Hi Soichi, you

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-05 Thread Hoopes, Andrew
at 76, scaling input intensities by 1.895 From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Soichi Hayashi Sent: Monday, August 5, 2019 11:32 AM To: Freesurfer support list Subject: Re: [Freesurfer] [External] Re: mri_deface fails on pediatric

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-05 Thread Soichi Hayashi
External Email - Use Caution We run on our freesurfer through singularity/docker container, and we are currently using Centos7 as the base image to build our freesurfer container, but we can run it on any other Linux based OSes. As far as our hardware goes, we run on variety of

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-04 Thread Bruce Fischl
Hi Soichi I have a fix for you. Can you let us know what kind of hardware/software env you are running in and we will send it to you? cheers Bruce On Sun, 4 Aug 2019, Soichi Hayashi wrote: External Email - Use Caution Bruce, I've uploaded one of the failed subject to

Re: [Freesurfer] [External] Re: mri_deface fails on pediatric brain

2019-08-04 Thread Soichi Hayashi
External Email - Use Caution Bruce, I've uploaded one of the failed subject to surfer.nmr.mgh.harvard.edu ftp server (named t1.nii.gz).Thank you for looking into this problem. Soichi On Sun, Aug 4, 2019 at 10:35 AM Bruce Fischl wrote: > This message was sent from a non-IU