Re: [Freesurfer] -FLAIRpial in v6.0 positions pial surfaces much more externally in comparison to v5.3

Dear Matt, I do not use HCP pipeline scripts for this project. This is standard 1x1x1 mm3 data so I thought standard freeSurfer pipeline could work well here. I also thought that standard recon-all version 6.0 with this data should work better than v5.3 which, I expect, solved some issues

Re: [Freesurfer] -FLAIRpial in v6.0 positions pial surfaces much more externally in comparison to v5.3

Since I believe you said you are using my code, I would recommend to stick with 5.3 at this time. Peace, Matt. From: on behalf of Antonin Skoch Reply-To: Freesurfer support list Date: Tuesday, February

Re: [Freesurfer] -FLAIRpial in v6.0 positions pial surfaces much more externally in comparison to v5.3

Dear Bruce, thank you for the feedback. I would definitely be interested in 6.1 beta. What is the approximate timeline of release? We are working on quite large project (involving -FLAIRpial) and I have to decide whether to go to v6.0 or to stick with v5.3. Do you think that so far the 5.3

Re: [Freesurfer] -FLAIRpial in v6.0 positions pial surfaces much more externally in comparison to v5.3

Hi Antonin yes, V6 was not meant for T2/FLAIR and we didn't test it extensively. We have been optimizing things in the past week for T2/FLAIR and I expect 6.1 will be better for them. We can give you a beta soon if you like. cheers Bruce On Tue, 7 Feb 2017, Antonin Skoch wrote: > Dear