Re: [Freesurfer] Pial in the thalamus

Thanks Bruce, will try that! Yann > On 16 Mar 2017, at 10:39 AM, Bruce Fischl wrote: > > if you edit the aseg to make them thalamus and rerun autorecon2-wm and > autorecon3 it should fix it. Not sure why the aseg failed there though - it > usually does better >

Re: [Freesurfer] Pial in the thalamus

if you edit the aseg to make them thalamus and rerun autorecon2-wm and autorecon3 it should fix it. Not sure why the aseg failed there though - it usually does better cheers Bruce On Thu, 16 Mar 2017, Yann Quidé wrote: Hi Bruce, Thanks for your reply. Most of the voxels are not labelled as

Re: [Freesurfer] Pial in the thalamus

Hi Yann are those voxels labeled thalamus in the aseg? cheers Bruce On Wed, 15 Mar 2017, Yann Quidé wrote: Dear all, We have this issue around the thalamus that is recurring in several of our scans and there does not seem to be a problem with the white matter mask in that area. Is it a

[Freesurfer] Pial in the thalamus

Dear all, We have this issue around the thalamus that is recurring in several of our scans and there does not seem to be a problem with the white matter mask in that area. Is it a problem? Does anyone have an idea how to fix this? We are using Freesurfer v5.3. Thanks. Yann