Re: [Freesurfer] 5.2 pial surfaces

2013-04-16 Thread Yang, Daniel
Dear Bruce, Thanks so much again for improving it. When looking at the pial surfaces, I noticed that sometimes the pial surfaces and the main surfaces are entangled in 5.2 (but it seems less so in 5.1). Here are two slides (https://dl.dropboxusercontent.com/u/65918007/FS%205.2.pptx) with this ve

Re: [Freesurfer] 5.2 pial surfaces

2013-04-16 Thread Bruce Fischl
glad to hear it Bruce On Tue, 16 Apr 2013, Yang, Daniel wrote: > Thanks so much for the improvement! > > I ran the new mris_make_surfaces and the pial surfaces look much better in > FS 5.2! > > Here is the comparison slice if you're interested. > > https://yalesurvey.qualtrics.com/SE/?SID=SV_ddwW7

Re: [Freesurfer] 5.2 pial surfaces

2013-04-16 Thread Yang, Daniel
hD Postdoctoral Researcher Yale Child Study Center New Haven, CT (203) 737-5454 > >Date: Sat, 13 Apr 2013 22:36:32 -0400 (EDT) >From: Bruce Fischl >Subject: [Freesurfer] 5.2 pial surfaces >To: freesurfer@nmr.mgh.harvard.edu > > >Hi All > >we've tracked down th

[Freesurfer] 5.2 pial surfaces

2013-04-13 Thread Bruce Fischl
Hi All we've tracked down the problem with 5.2 pial surfaces that affects some types of acquisitions. We will be testing the fixed version this week and hope to release a corrected mris_make_surfaces in the near future. You should just be able to rerun autorecon2 I believe to update your surfac