You do not need to specify that. In fact, you should not because it may
mess up the orientation. You do not need to add any special arguments to
mri_convert. You can also specify .nii instead of .nii.gz
On 9/27/16 3:14 PM, Sepeta, Leigh wrote:
Hi all,
Sorry to re-post:
I am trying to
Hi all,
Sorry to re-post:
I am trying to bring my FreeSurfer brainmask into SPM and then to coregister it
(along with some ROIs from FreeSurfer) to the same subject's mprage already
processed (coregistered to functional data) in SPM. To do this, I used:
mri_convert brainmask.mgz
Hi all,
I am trying to bring my FreeSurfer brainmask into SPM and then to coregister it
(along with some ROIs from FreeSurfer) to the same subject's mprage already
processed (coregistered to functional data) in SPM. To do this, I used:
mri_convert brainmask.mgz brainmask.nii.gz (then used
