[Freesurfer] Basic error

2015-08-16 Thread Hugh Pemberton
Hi freesurfer team, I think this is a very basic error with the mri_convert command but I can't seem to make it work, I'm getting this: mri_convert $PWD 001.nii mri_convert /Applications/freesurfer/subjects/DEM009/dicom/20140731/1835 001.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05

Re: [Freesurfer] Basic error

2015-08-16 Thread Bruce Fischl
What is the source file you are trying to convert? You need to specify a file not a directory. If it is dicom, give it one file in the right series Cheers Bruce On Aug 16, 2015, at 2:34 PM, Hugh Pemberton hughpembert...@gmail.com wrote: Hi freesurfer team, I think this is a very basic

Re: [Freesurfer] Basic error

2015-08-16 Thread Matt Glasser
To: Freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Basic error Hi freesurfer team, I think this is a very basic error with the mri_convert command but I can't seem to make it work, I'm getting this: mri_convert $PWD 001.nii mri_convert /Applications