Re: [Freesurfer] Brainmask edit error

2016-06-09 Thread Ani Varjabedian
*From:* freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Ani Varjabedian <a...@nmr.mgh.harvard.edu> *Sent:* Tuesday, June 7, 2016 5:45:43 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Brainmask edit error Hi Sabrina, Jus

Re: [Freesurfer] Brainmask edit error

2016-06-07 Thread Sabrina Yu
edu> Sent: Tuesday, June 7, 2016 5:45:43 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainmask edit error Hi Sabrina, Just wanted to update you on my progress. I tried editing the wm.mgz and filling in the hole to see if that might help things. If we can get the wm surf

Re: [Freesurfer] Brainmask edit error

2016-06-02 Thread Ani Varjabedian
PM To: Freesurfer support list Subject: Re: [Freesurfer] Brainmask edit error because it violates too many of our assumptions about the topology and geometry of the brain. cheers Bruce On Mon, 23 May 2016, Sabrina Yu wrote: Hi Bruce, Thank you for your reply. I've uploaded the .mgz and surfaces

Re: [Freesurfer] Brainmask edit error

2016-06-02 Thread Ani Varjabedian
Freesurfer support list Subject: Re: [Freesurfer] Brainmask edit error because it violates too many of our assumptions about the topology and geometry of the brain. cheers Bruce On Mon, 23 May 2016, Sabrina Yu wrote: Hi Bruce, Thank you for your reply. I've uploaded the .mgz and surfaces using

Re: [Freesurfer] Brainmask edit error

2016-06-02 Thread Sabrina Yu
of trying to edit the surfaces? >>> >>> Thank you, >>> Sabrina >>> >>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl >>>

Re: [Freesurfer] Brainmask edit error

2016-05-23 Thread Sabrina Yu
gt; <fis...@nmr.mgh.harvard.edu> > Sent: Thursday, May 19, 2016 11:24:51 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Brainmask edit error > > Hi Sabrina > > it's tough to tell from just the 2 slices. If you upload the subject one > of us will take a look, bu

Re: [Freesurfer] Brainmask edit error

2016-05-23 Thread Sabrina Yu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: Thursday, May 19, 2016 11:24:51 AM To: Freesurfer support list Subject: Re: [Freesurfer] Brainmask edit error Hi Sabrina it's tough to tell from just the 2 slices. If you upload the subje