Hi Brad,
the base commands needs a space before -tp
recon-all -base 005_IHD_1_base -tp 005_IHD_1 -tp 005_IHD_1_post -all
check if the directory 005_IHD_1_base exists.
Also check if this file exits:
/usr/local/freesurfer/subjects/005_IHD_1_base/mri/transforms/talairach.auto.xfm
Best, Martin
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Brad Matushewski
Sent: March 30, 2017 2:38 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Trying to compare 2 scans from same person, 6 months
apart.
First scan is
