Re: [Freesurfer] Cannot disable the topology correction

2020-09-01 Thread Douglas N. Greve
24:28 -0400 >> From: "Douglas N. Greve" >> Subject: Re: [Freesurfer] Cannot disable the topology correction >> To: >> Message-ID: <5284d1e1-011c-2e25-9d22-e222bd9e5...@mgh.harvard.edu> >> Content-Type: text/plain; charset="utf-8"; format=flowed >

Re: [Freesurfer] Cannot disable the topology correction

2020-08-28 Thread k3ops
2020 11:24:28 -0400 > From: "Douglas N. Greve" > Subject: Re: [Freesurfer] Cannot disable the topology correction > To: > Message-ID: <5284d1e1-011c-2e25-9d22-e222bd9e5...@mgh.harvard.edu> > Content-Type: text/plain; charset="utf-8"; format=flowed > > I

Re: [Freesurfer] Cannot disable the topology correction

2020-08-25 Thread Douglas N. Greve
If the topology correction has not been done, then the stream cannot proceed. If you really want to skip the topofix, then just copy lh.orig.nofix to lh.orig and run with -nofix, but this is not recommeneded On 8/25/2020 11:04 AM, k3...@free.fr wrote: > External Email - Use Caution > >

[Freesurfer] Cannot disable the topology correction

2020-08-25 Thread k3ops
External Email - Use Caution Hi FS team, I am having an error when disabling (-nofix) the topology correction with the recon-all command. The "-nofix" option is skipping the topology correction as expected but then the next step is failing because "?h.orig" file does not exist.