...@nmr.mgh.harvard.edu
On Behalf Of Paul Dhami
Sent: Thursday, August 5, 2021 5:00 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Creating an Freesurfer .annot file from an MNI coordinate
region of interest
External Email - Use Caution
Dear FS community,
My ultimate goal
First, try running recon-all on the mni152 template
Find the vertex closest to your seed coordinate
You can create a circle on the surface with something like this (where
vertexno is the vertex number you found above)
mri_volsynth --dim nvertices 1 1 1 --pdf delta --delta-crsf vertexno 1 1
1
External Email - Use Caution
Dear FS community,
My ultimate goal is to do a seed of interest connectivity analysis.
Accordingly, I have MNI coordinates for a seed (e.g., left DLPFC). However,
for the softwares I am using (CONN toolbox and Brainstorm), I need a .annot
file which
