Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread Greve, Douglas N.,Ph.D.
The command is being run from inside of a C-file using the system command, so there is no way for them to change it On 10/02/2018 01:43 PM, Dicamillo, Robert wrote: > It may be complaining about >& for redirection.  Try using 2>&1 instead. > >> On Oct 2, 2018, at 4:56 AM, k3...@free.fr

Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread Dicamillo, Robert
It may be complaining about >& for redirection. Try using 2>&1 instead. On Oct 2, 2018, at 4:56 AM, k3...@free.fr wrote: sh: 1: Syntax error: Bad fd number ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread Greve, Douglas N.,Ph.D.
4 > Objet: Re: [Freesurfer] Error during decompression of DICOM JPEG compressed > series > > What shell are you using? Try using cshell or tcshell to see if it works. > > On 10/2/18 4:56 AM, k3...@free.fr wrote: >> External Email - Use Caution >> >> Hi F

Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread k3ops
tobre 2018 15:18:14 Objet: Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series What shell are you using? Try using cshell or tcshell to see if it works. On 10/2/18 4:56 AM, k3...@free.fr wrote: > External Email - Use Caution > > Hi FS team, > > I

Re: [Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread Greve, Douglas N.,Ph.D.
What shell are you using? Try using cshell or tcshell to see if it works. On 10/2/18 4:56 AM, k3...@free.fr wrote: > External Email - Use Caution > > Hi FS team, > > I am used to run Freesurfer v6.0 on a Ubuntu 18.04 workstation and everything > runs well for most of the subjects that I

[Freesurfer] Error during decompression of DICOM JPEG compressed series

2018-10-02 Thread k3ops
External Email - Use Caution Hi FS team, I am used to run Freesurfer v6.0 on a Ubuntu 18.04 workstation and everything runs well for most of the subjects that I process so first thanks for this great tool. I am facing an issue with a JPEG compressed DICOM series that I am not