Hi Francesco
if you upload one of the dicom series that causes the problems we will
take a look. If you can also send us the rawavg.mgz after your successful
recon-all from the .nii that would also help
cheers
Bruce
On Wed, 20 Aug 2014, Francesco
Deleo wrote:
Hi all!
Sorry for my late
Hi all!
Sorry for my late answer but I went on holiday and I didn't have access to
my mail.
The background is normal in original dicoms and it is not an avarage of
more than one run.
The problem I reported was solved in all cases converting dicoms to nifti
with dcm2nii and using the oriented
-- Forwarded message --
From: Francesco Deleo franc.de...@gmail.com
Date: 2014-08-08 18:06 GMT+02:00
Subject: Re: [Freesurfer] mpr2mni305 failed error
To: freesurfer freesurfer@nmr.mgh.harvard.edu
It is not ok...
It seems to have a contrast problem... I can send a snapshot, or
can you tar and gzip the dicoms and send them to us? Is there a high
background level in them as well? Is this the average of more than one
run? You should check the mri/orig/00?.mgz volume(s) as well
On Fri, 8 Aug
2014, Francesco Deleo wrote:
-- Forwarded message --
From:
I all!
I have the same problem in about 15% of MRI scans, all made with the same
scanning protocol (T1 MPRAGE in a SIEMENS Avanto 1,5 T) during the
recon-all -all process.
I can't recognize any difference between those scans which work correctly
and those not.
I have never found the same error on
