Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-30 Thread R Edgar
On 30 November 2017 at 09:42, Dr. M. Shahid wrote: >> > Has all of the GPU code also been updated in the new FS6.0 version or >> > the >> > code is still from the old 5.x but can be compiled with new cuda >> > toolkits? >> >> I made a small tweak for GCAMorph

Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-30 Thread Dr. M. Shahid
On Wed, Nov 29, 2017 at 5:27 AM, R Edgar wrote: > On 28 November 2017 at 09:12, Dr. M. Shahid > wrote: > > > Has all of the GPU code also been updated in the new FS6.0 version or the > > code is still from the old 5.x but can be compiled with

Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-28 Thread R Edgar
On 28 November 2017 at 09:12, Dr. M. Shahid wrote: > Has all of the GPU code also been updated in the new FS6.0 version or the > code is still from the old 5.x but can be compiled with new cuda toolkits? I made a small tweak for GCAMorph (primarily ca_register) which

Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-28 Thread Dr. M. Shahid
Hi, Has all of the GPU code also been updated in the new FS6.0 version or the code is still from the old 5.x but can be compiled with new cuda toolkits? Best regards, -- Shahid. On Mon, Nov 27, 2017 at 9:29 PM, Meij, Henk wrote: > Well, it looks the *_cuda files for

Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-28 Thread R Edgar
On 27 November 2017 at 11:02, Meij, Henk wrote: > Just wanted to report back a success. I had to do some fixes so hope this > helps anybody. > > My gpus are GTX1080Ti and the CPU involved is E5-2620 dual 10 core on this > server. > > The vanilla cpu recon-all finished in 7

Re: [Freesurfer] GPU compile cuda8/centos7

2017-11-27 Thread Meij, Henk
Well, it looks the *_cuda files for mri_glmfit and mri_robust_register and some others were dropped from the repository. Downloaded fresh copy today but the files are not there. So no errors. -Henk From: Meij, Henk Sent: Monday, November 27, 2017 11:02:44 AM

[Freesurfer] GPU compile cuda8/centos7

2017-11-27 Thread Meij, Henk
Just wanted to report back a success. I had to do some fixes so hope this helps anybody. My gpus are GTX1080Ti and the CPU involved is E5-2620 dual 10 core on this server. The vanilla cpu recon-all finished in 7 hours, the gpu run finished in 4.3 hours. Q: I seem to not have any errors or