Re: [Freesurfer] Generating Mean thickness surface file for volume ROI mask

2017-10-16 Thread Douglas Greve
May the ROI to the surface using mri_vol2surf, then use mri_segstats to extract the mean value On 10/13/17 4:09 PM, Dev vasu wrote: Dear all, I have a   ROI mask volume file and i would like to generate Mean cortical thickness surface file (i.e lh.ROI.thickness.fsaverage.mgh and

[Freesurfer] Generating Mean thickness surface file for volume ROI mask

2017-10-13 Thread Dev vasu
Dear all, I have a ROI mask volume file and i would like to generate Mean cortical thickness surface file (i.e lh.ROI.thickness.fsaverage.mgh and rh.ROI.thickness.fsaverage.mgh) , could some one guide me how i could obtain such file. I have 120 subjects and I have done recon-all for all