[Freesurfer] Group analysis tutorial

2014-07-19 Thread Vilde
Dear mailing list, I am doing the group analysis freesurfer tutorial. When I try to open the significance map, I get the error message unrecognized sub-opton flag 'overlay_threshold'. The command is freeview -f

Re: [Freesurfer] Group analysis tutorial

2014-07-19 Thread Bruce Fischl
Hi Vilde what version are you using? You can always leave the overlay_threshold out and set it through the interface instead cheers Bruce On Sat, 19 Jul 2014, Vilde wrote: Dear mailing list, I am doing the group analysis freesurfer tutorial. When I try to open the significance map, I get

Re: [Freesurfer] Group analysis tutorial

2014-07-10 Thread Louis Nicholas Vinke
Hi Qijing, Under the 'Freeview dev build' section on this wiki page you can download an updated version of freeview. http://freesurfer.net/fswiki/Download -Louis On Mon, 7 Jul 2014, Qijing Yu wrote: Hi Doug, By new version, do you mean v5.3.0? Qijing On Mon, Jul 7, 2014 at 11:31

Re: [Freesurfer] Group analysis tutorial

2014-07-10 Thread Qijing Yu
Thank you Doug and Louis!! was stuck in something else in the past few days. I will try the new version and let you know if I still have problems viewing the results. Thanks again! Really appreciate your help! On Thu, Jul 10, 2014 at 10:57 AM, Louis Nicholas Vinke vi...@nmr.mgh.harvard.edu

Re: [Freesurfer] Group analysis tutorial

2014-07-07 Thread Douglas N Greve
Yea, that is actually a feature in the new version On 07/02/2014 02:17 PM, Joshua S wrote: Hi all, I was following the group analysis tutorial when I got an error when trying to view the uncorrected significance map with freeview. I used the command freeview -f

Re: [Freesurfer] Group analysis tutorial

2014-07-07 Thread Qijing Yu
Hi Doug, By new version, do you mean v5.3.0? Qijing On Mon, Jul 7, 2014 at 11:31 AM, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: Yea, that is actually a feature in the new version On 07/02/2014 02:17 PM, Joshua S wrote: Hi all, I was following the group analysis tutorial when I

Re: [Freesurfer] Group analysis tutorial

2014-07-07 Thread Douglas N Greve
No, the one that will replace 5.3. I think the new version of freeview is available here ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/ On 07/07/2014 01:05 PM, Qijing Yu wrote: Hi Doug, By new version, do you mean v5.3.0? Qijing On Mon, Jul 7, 2014 at 11:31 AM, Douglas