Re: [Freesurfer] Inconsistent Morphology Output

2019-11-11 Thread Greve, Douglas N.,Ph.D.
It should give consistent output when re-running. The first thing to check is that the version of FS has not changed. In general, you should NOT be using the development version. The second thing is to make sure that it is the FS output that is changing and not that something has changed in

Re: [Freesurfer] Inconsistent Morphology Output

2019-11-08 Thread Bruce Fischl
or start by sending us the recon-all.log from the two runs On Fri, 8 Nov 2019, Chen, Christine wrote: External Email - Use Caution Hello,   My lab has been running T1 (MPRAGE) data through run_subject (uses recon-all, autorecon, mris_volume and mris_wm_volume) then

Re: [Freesurfer] Inconsistent Morphology Output

2019-11-08 Thread Bruce Fischl
Hi Christine maybe you can tar and gzip a subject that has been run twice with different results and file drop it or ftp it to us? cheers Bruce On Fri, 8 Nov 2019, Chen, Christine wrote: External Email - Use Caution Hello,   My lab has been running T1 (MPRAGE) data

[Freesurfer] Inconsistent Morphology Output

2019-11-08 Thread Chen, Christine
External Email - Use Caution Hello, My lab has been running T1 (MPRAGE) data through run_subject (uses recon-all, autorecon, mris_volume and mris_wm_volume) then through run.r (pulls freesurfer.r and pedbirn.r) using the Desikan-Killiany atlas to output measures of cortical