Re: [Freesurfer] LGI path problem

2013-11-05 Thread Linn Mittlestein
Hi, Thank you very much, it works. I now however have another problem (sorry!). I have run the command on test subject and want to display using tksurfer. The file lh.pial_lgi has for sure been created, and i cd into correct subjects directory however when I try tksurfer lh inflated -overlay

Re: [Freesurfer] LGI path problem

2013-11-05 Thread Chris Watson
Are you in the 'surf' directory? If not, then do -overlay $subject/surf/lh.pial_lgi On 11/05/2013 11:26 AM, Linn Mittlestein wrote: Hi, Thank you very much, it works. I now however have another problem (sorry!). I have run the command on test subject and want to display using tksurfer. The

Re: [Freesurfer] LGI path problem

2013-10-28 Thread Marie Schaer
Hi Linn, We have an issue using lGI with matlab 2013 in the current version. It will be updated in the new version, but in the mean time if you want to use it, it's a very small change that you have to do. See the following post:

[Freesurfer] LGI path problem

2013-10-18 Thread Linn Mittlestein
Hi, I am trying to compute lgi measures, and I think my problem lies in the fact that the matlab path is not set correctly; it is calling an older version of matlab however I need it to point to matlab2013b. I have tried numerous things like changing the startup.m file, the .bashrc file and