Re: [Freesurfer] Label to Nii Conversion

2015-04-02 Thread Douglas N Greve
You can use mri_label2label and use the --outmask option. If you are going to use mri_segstats to do the extraction, you can skip the mri_label2label step and specify the label with --slabel (and add --id 1 otherwise it will give you two ROI results, one in the label, the other outside the

[Freesurfer] Label to Nii Conversion

2015-04-01 Thread MCLAREN, Donald
I have a label file on the surface, but want to be able to use it to extract surface data that is already in nifti format (dimensions: [2737 1 6]). Is there a way to convert a label to nifti? Best Regards, Donald McLaren = D.G. McLaren, Ph.D. Research Fellow, Department of