Re: [Freesurfer] PET partial volume correction:mri_gtmpvc error

2017-12-13 Thread Herranz Muelas, Elena
lp with this would be very much appreciate it! Thanks! Elena From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Thursday, December 07, 2017 12:19 PM To: freesurfer@

Re: [Freesurfer] PET partial volume correction:mri_gtmpvc error

2017-12-07 Thread Douglas N Greve
HiĀ  Elena, it looks like the aseg.mgz has several unexpected segments in it. The aseg.auto.mgz looks ok, so I think FS is working properly. It looks like you made some changes to the aseg. What did you do? On 12/06/2017 03:51 PM, Douglas N Greve wrote: > Did you run this through the standard

Re: [Freesurfer] PET partial volume correction:mri_gtmpvc error

2017-12-06 Thread Douglas N Greve
Did you run this through the standard FS pipeline? If so, can you send me the FS analysis for this subject? You can upload it here https://gate.nmr.mgh.harvard.edu/filedrop2 On 12/06/2017 09:46 AM, Herranz Muelas, Elena wrote: > Dear Freesurfers, > > > I am trying to apply partial volume

[Freesurfer] PET partial volume correction:mri_gtmpvc error

2017-12-06 Thread Herranz Muelas, Elena
Dear Freesurfers, I am trying to apply partial volume correction to my PET images, following the steps explained in the PetSurfer wiki. When I run the mri_gtmpvc command, it works fine for most of the subjects but for some of them I get the following error message: