Re: [Freesurfer] Recon-all exited without errors

2023-03-06 Thread Douglas N. Greve
That one looks like there was a massive failure of the registration. One thing you can try is to add -samseg-reg to the command line. This will use samseg to do this registration, which may be more robust. Is there anything amiss with your image? On 2/13/2023 10:25 AM, Goeckner, Bryna wrote:

Re: [Freesurfer] Recon-all exited without errors

2023-02-13 Thread Goeckner, Bryna
External Email - Use Caution Thanks for the response. I should have been more clear in my first email. I have used tkregister2 in the past to fix talairachs, but this one does not appear to be fixable with the in-plane shifting, scaling, and rotating that is available within