: [Freesurfer] Scalable recon workflow
Hi Paul,
Thanks for your speedy response! In that case, I assume 1GB/core is
the memory allocation? Is it helpful to increase that?
Best,
Mitch
*From:* freesurfer-boun
memory.
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Horn, Mitchell Jacob
Sent: Tuesday, May 3, 2022 2:26 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Scalable recon workflow
Hi Paul,
Thanks for your speedy response! In that case
To: Freesurfer support list
Subject: Re: [Freesurfer] Scalable recon workflow
External Email - Use Caution
Hi Mitch,
In our experience, -openmp 8 gives faster recons than -openmp 4, but the gains
after -openmp 8 diminish quickly and aren't worth it.
-Paul
On Tue, May 3, 2022 at 12:51 PM Horn
External Email - Use Caution
Hi Mitch,
In our experience, -openmp 8 gives faster recons than -openmp 4, but the
gains after -openmp 8 diminish quickly and aren't worth it.
-Paul
On Tue, May 3, 2022 at 12:51 PM Horn, Mitchell Jacob
wrote:
> Hi Experts,
>
>
>
> If I have 100s
Hi Experts,
If I have 100s of subjects to recon and have access to an HPC with both GPU and
CPU options what is the recommended flags to maximize speed performance? Is …
-parallel -openmp 4 … still the best approach? And if so, is 2GB memory/core
best (keeping it 8GB memory/subject) or is
