support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
it might, but you will need to make some fixes that are in 6.0 (soon) but not
in 5.3. The 5.3 recon-all changes the T2 datatype to uchar when it resamples it
to be in register with the T
-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Tuesday, 8 March 2016 4:23 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
Hi Chris
I took a look, and the problem is that there are big changes in contrast b
2016 4:23 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
Hi Chris
I took a look, and the problem is that there are big changes in contrast
between occipital and frontal lobes. If we normalize both posterior and front
eesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Chris Adamson
Sent: Monday, 7 March 2016 1:54 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
It is checkT2pial.zip
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mai
Subject: Re: [Freesurfer] T2pial shrinks pial surface
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Mon, 7 Mar
2016, Chris Adamson wrote:
> How can I upload it to you?
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-
u] On Behalf Of Bruce
> Fischl
> Sent: Monday, 7 March 2016 1:25 PM
> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
> Subject: Re: [Freesurfer] T2pial shrinks pial surface
>
> Hi Chris
>
> if you upload that dataset I'll try to take a look soon
>
&g
March 2016 1:25 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
Hi Chris
if you upload that dataset I'll try to take a look soon
cheers
Bruce
On Mon, 7 Mar 2016, Chris Adamson wrote:
The T2pial option mostly
surfer] T2pial shrinks pial surface
Hi Chris
if you upload that dataset I'll try to take a look soon
cheers
Bruce
On Mon, 7 Mar 2016, Chris Adamson wrote:
>
> The T2pial option mostly works beautifully. I have a few cases where
> the pial surface just shrinks globally and wraps
Hi Chris
if you upload that dataset I'll try to take a look soon
cheers
Bruce
On Mon, 7 Mar 2016, Chris Adamson wrote:
The T2pial option mostly works beautifully. I have a few cases where the
pial surface just shrinks globally and wraps over the white surface (see
attached). I have checked
5.3.0 stable
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Matt Glasser
Sent: Monday, 7 March 2016 11:50 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
Chris Adamson
<chris.adam...@mcri.edu.au>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, March 6, 2016 at 6:14 PM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] T2pial shrinks pial surfa
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