Re: [Freesurfer] Trouble getting git-annex files

Hello Ruy - sending you a followup off list to your email. - rob On May 3, 2018, at 3:16 PM, Ricardo Valle > wrote: External Email - Use Caution Thank you for your help Rob. Could you walk me through how you ran setup_configure and

Re: [Freesurfer] Trouble getting git-annex files

External Email - Use Caution Thank you for your help Rob. Could you walk me through how you ran setup_configure and configure on Mac? I ran (from the root of the tree): ./setup_configure ./configure F77=/usr/local/bin/gfortran-4.9 CC=/usr/local/bin/gcc-4.9

Re: [Freesurfer] Trouble getting git-annex files

Hello Ruy, The -r flag to will cause the build to skip some dependencies, e.g., sometimes makefiles will rebuild the world when you don’t need them to, so if you are building only 1 file, then it can be useful. It works for me to cd to ./freesurfer/trc and do the same thing without using -r,

Re: [Freesurfer] Trouble getting git-annex files

External Email - Use Caution Hello Rob, No, I mean the dmri_train binary that is part of Tracula. The main source file is ./freesurfer/trc/dmri_train.cxx. I don’t mind building the whole tree if necessary, but I haven’t been able to do so either. Do you know what the -r flag

Re: [Freesurfer] Trouble getting git-annex files

Hello Ruy, Do you mean the mri_train binary that gets built under ./freesurfer/mri_train ? (I see a ./freesurfer/dmri_poistats, ./freesurfer/dmri_tensroreig but not a ./freesurfer/dmri_train). Things are not necessarily setup so you can cd to ./freesurfer/ and just build what is there in

Re: [Freesurfer] Trouble getting git-annex files

External Email - Use Caution Hello, I need help recompiling dmri_train for Mac. It seems like the instructions in the Mac Developer’s don’t work. When I cd to the trc subdirectory and run make, I am told there is nothing to do. I tried editing the Makefile, adding bin_PROGRAMS