Re: [Freesurfer] Using the muscle ROI in the FreeSurferColorLUT

2013-05-02 Thread jwaugh
Thanks Bruce, Sorry for the naiive questions - I'm still pretty green. If I define a label for, say, the head of the left sternocleidomastoid, using tkmedit, could I then generalize that label to the rest of my patient cohort using mri_label2label? Thanks, Jeff Hi Jeff our standard

[Freesurfer] Using the muscle ROI in the FreeSurferColorLUT

2013-05-01 Thread jwaugh
Hello Freesurfers, I would like to use the muscle ROI in the LUT (number 123). Can anyone tell me which muscles (all cranial? cervical too?) are included? I tried making a subject-specific label using the following command: mri_cor2label --c

Re: [Freesurfer] Using the muscle ROI in the FreeSurferColorLUT

2013-05-01 Thread Bruce Fischl
Hi Jeff our standard segmentation doesn't include muscle. We did have some prototypes that labeled all cranial muscles but they are not much more than prototypes Bruce On Wed, 1 May 2013, jwa...@nmr.mgh.harvard.edu wrote: Hello Freesurfers, I would like to use the muscle ROI in the LUT