Sure. You can either change it in the environment, or pass it to recon-all with
-sd
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Mostafa Fakhri
Sent: Saturday, June 25, 2022 9:35 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] change the $SUBJECTS_DIR
External Email - Use Caution
Hello to all, I am new to FreeSurfer. By executing recon-all I get the
permission error.
Is there a way to change the $SUBJECTS_DIR, such as /share/users/my
user/subject name ?
$ recon-all -subject 102109 -i T1w.nii.gz -all
mkdir: cannot create
