[Freesurfer] custom making an overlay

2012-03-21 Thread Linda Douw
Hi freesurfers,

Is it possible to make an overlay to load into tksurfer containing any
type of data (for instance, centrality measures computed with graph
theory) for a particular annotation? In the mailing archive, I've found
tips about creating a custom LUT table and making it a segmentation, but
you need the coordinates of the labels for that. In my case, I've made my
own parcellation by using mris_divide_parcellation, so then I would have
to know where to find the coordinates (I don't).
And do you think this is the most efficient method?

Thanks!
-- 
Linda Douw, Ph.D.

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Re: [Freesurfer] custom making an overlay

2012-03-21 Thread Bruce Fischl
Hi Linda

it should be easy enough to make a scalar map and save it from matlab 
using save_mgh or MRIwrite.m. If it's first dimension has nvertices then 
tksurfer will know it's a surface overlay and not a volume.

cheers,
Bruce
On Wed, 21 Mar 2012, Linda Douw wrote:

 Hi freesurfers,

 Is it possible to make an overlay to load into tksurfer containing any
 type of data (for instance, centrality measures computed with graph
 theory) for a particular annotation? In the mailing archive, I've found
 tips about creating a custom LUT table and making it a segmentation, but
 you need the coordinates of the labels for that. In my case, I've made my
 own parcellation by using mris_divide_parcellation, so then I would have
 to know where to find the coordinates (I don't).
 And do you think this is the most efficient method?

 Thanks!

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.