Re: [Freesurfer] dmri_pathstats segment

2020-03-13 Thread Yendiki, Anastasia
From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Wang, Lily Sent: Friday, March 13, 2020 3:50 PM To: Freesurfer support list Subject: [Freesurfer] dmri_pathstats segment Hi, I am trying to get voxel by voxel stats for fmajor on a threshold that's not the 0.2 default because when

[Freesurfer] dmri_pathstats segment

2020-03-13 Thread Wang, Lily
Hi, I am trying to get voxel by voxel stats for fmajor on a threshold that's not the 0.2 default because when I looked at merged nii, fmajor is constructed correctly but on a different threshold. This is the command I used: dmri_pathstats --intrk fmajor_PP_avg33_mni_bbr/path.pd.trk --dtbase