[Freesurfer] error for autorecon3

2013-08-19 Thread Troebinger, Luzia
Hi all, I am trying to run recon-all on a structural for one of my subjects, but freesurfer exited with errors during the last few stages (the ones covered by autorecon-3). It appears that it is just missing some label - the problem occurs at the following stage: painting output onto subject

Re: [Freesurfer] error for autorecon3

2013-08-19 Thread Bruce Fischl
Hi Luzia the lh.EC_average should be a symlink to $FREESURFER_HOME/subjects/lh.EC_average if it doesn't exist, create it with ln -s cheers Bruce On Mon, 19 Aug 2013, Troebinger, Luzia wrote: Hi all, I am trying to run recon-all on a structural for one of my subjects, but freesurfer