Re: [Freesurfer] error rerunning recon-all (exited with ERRORS)

2018-04-05 Thread Bruce Fischl
Hi Anna from your log file it looks like some other process is using more than 2/3 of the memory on your machine: total used free sharedbuffers cached Mem: 24729588 1685252478770644095060 0 10543292 -/+ buffers/cache:6309232

Re: [Freesurfer] error rerunning recon-all (exited with ERRORS)

2018-03-30 Thread Douglas Greve
It looks like brainmask.mgz might have been corrupted. Can you run mri_info on it? Does its size look about right? Can you create brainmask.mgz again? On 3/29/18 4:06 PM, Anna Daniels wrote: Dear FreeSurfer team, after editing the brainmask.mgz (manually or with gcut),