Re: [Freesurfer] error while running "-hippocampal-subfields-T1" with Freesurfer 6.0

2019-09-09 Thread Bruce Fischl
Hi Shahrazd can you try: chmod -R a+rx $FREESURFER_HOME/bin and see if that fixes your problem? Bruce On Mon, 9 Sep 2019, shahrzad kharabian wrote: External Email - Use Caution Hi,  I have already run recon-all with default options on a large set of T1-weighted images,

[Freesurfer] error while running "-hippocampal-subfields-T1" with Freesurfer 6.0

2019-09-09 Thread shahrzad kharabian
External Email - Use Caution Hi, I have already run recon-all with default options on a large set of T1-weighted images, using Freesurfer v 6.0. Now we want to extract the hippocmpal subfields from these already processed images. Apparently our installation was missing Matlab