Re: [Freesurfer] exporting segmented mgz file

2020-04-26 Thread Bruce Fischl
Hi Atira what was your mri_convert command line? Make sure to specify no scaling of the intensity volume. Can you try adding: -ns 1 to the mri_convert command line, and if that doesn't work send us the full command line and full screen output from it? This is always a good thing to do as

[Freesurfer] exporting segmented mgz file

2020-04-26 Thread atira gan-zvi bick
External Email - Use Caution Hi I'm new to freesurfer. I used freesurfer to preform Thalamus segmentation, and can see the segmented volume in freeview. I would like to export the segmented volume to nii to continue analysis in MRvista. I was able to do this using mri_convert -