[Freesurfer] makelabels error

2013-04-06 Thread jwaugh
Hello, I am trying to adapt our ROIs used for tractography into a format that can be used in Freesurfer. I first used mri_cor2label to convert from nifti to .label format. When I run the following makelabels command: mri_label2label --srclabel

Re: [Freesurfer] makelabels error

2013-04-06 Thread Bruce Fischl
Hi Jeff have you looked at the labels? That error frequently means something is wrong in the coordinate transforms. Look at the label in the volume and see if it is where you think it should be. cheers Bruce On Sat, 6 Apr 2013, jwa...@nmr.mgh.harvard.edu wrote: Hello, I am trying to adapt