Re: [Freesurfer] mapping a volumetric statistical map to the cerebellum surface

2019-01-22 Thread Greve, Douglas N.,Ph.D.
Is grf.th1.3.pos.sig.cluster.mgh in the mni152 2mm space? You should check the registration with tkregister2 --mov grf.th1.3.pos.sig.cluster.mgh --reg $FREESURFER_HOME/average/mni152.register.dat --surfs It looks like you projected it to the white surface of fsaverage On 1/22/19 2:08 PM, john

Re: [Freesurfer] mapping a volumetric statistical map to the cerebellum surface

2019-01-22 Thread john Anderson
External Email - Use Caution Hi Dr Greve, Thanks for the comment: I ran vertex wise analysis on subcortical regions, I corrected the analysis for multiple comparison using "mri_glmfit-sim". One of the created files after correction for multiple comparison is

Re: [Freesurfer] mapping a volumetric statistical map to the cerebellum surface

2019-01-22 Thread Greve, Douglas N.,Ph.D.
Can you be more specific about how mri_vol2surf failed? Eg, command line, terminal output, reason you think it did not work On 1/21/19 10:47 AM, john Anderson wrote: > > External Email - Use Caution > > Dear FS experts, > I have a statistical map from the output of a surface based

[Freesurfer] mapping a volumetric statistical map to the cerebellum surface

2019-01-21 Thread john Anderson
External Email - Use Caution Dear FS experts, I have a statistical map from the output of a surface based analysis in subcortical regions. This statistical map shows significant difference between the groups in the cerebellum cortex. I reconstructed the cerebellar surfaces