form:
>>-0.0553 0.0101 -0.9984 129.8205
>> 0.9863 0.1563 -0.0530 -127.5422
>> 0.1555 -0.9877 -0.018699.3136
>> 0. 0. 0. 1.
>>
>> voxel-to-ras determinant 1
>
0 1.
>
> Best,
> Idil
> ________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Yagmur Ozdemir 19
> [yozdemi...@amherst.edu]
> Sent: Thursday, August 17, 2017 7:07 PM
> To: Freesurfer sup
-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
[fis...@nmr.mgh.harvard.edu]
Sent: Thursday, August 17, 2017 7:03 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mask alignment problem/mri_mask
Hi Idil
you need to give us much more
...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
[fis...@nmr.mgh.harvard.edu]
Sent: Thursday, August 17, 2017 7:03 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mask alignment problem/mri_mask
Hi Idil
you need to give us much more information
__
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Thursday, August 17, 2017 6:55 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mask alignment prob
gh.harvard.edu]
> Sent: Thursday, August 17, 2017 6:50 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mask alignment problem/mri_mask
>
> sorry, I don't understand
> Bruce
> On Thu, 17 Aug 2017, Yagmur Ozdemir 19 wrote:
>
>> Thank you!
>>
>> Then I
...@nmr.mgh.harvard.edu]
Sent: Thursday, August 17, 2017 6:50 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mask alignment problem/mri_mask
sorry, I don't understand
Bruce
On Thu, 17 Aug 2017, Yagmur Ozdemir 19 wrote:
> Thank you!
>
> Then I guess I would use the volume as the transform file to c
rvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Thursday, August 17, 2017 6:41 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mask alignment problem/mri_mask
>
> ok, but your mri_mask
: Thursday, August 17, 2017 6:41 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mask alignment problem/mri_mask
ok, but your mri_mask command line has the string "%s" in it, which is
not correct. You need to specify an actual file name. I also think you
are better off using m
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Thursday, August 17, 2017 6:14 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] mask alignment problem/mri_mask
>
...@nmr.mgh.harvard.edu]
Sent: Thursday, August 17, 2017 6:14 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mask alignment problem/mri_mask
Hi Idil
how did you create the mask and the transform? Also, you can't specify "%s"
on the command line - you need an actual name of a transform file.
ch
Hi Idil
how did you create the mask and the transform? Also, you can't specify "%s"
on the command line - you need an actual name of a transform file.
cheers
Bruce
On Thu, 17 Aug 2017, Yagmur Ozdemir
19 wrote:
Hello freesurfer experts,
A volume file I want to save as a mask(the
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