Re: [Freesurfer] mri_aparc2aseg issue

2013-04-11 Thread Douglas N Greve
Hi Paul, try using this color table, something like tkmedit HS_001 orig.mgz -seg aug_aparc+aseg.mgz paul.ctab doug On 04/08/2013 10:02 AM, Paul Beach wrote: Hi Freesurfers, I'm currently trying to take manually made ROIs (label files) that have been incorporated into new annotation files (

Re: [Freesurfer] mri_aparc2aseg issue

2013-04-08 Thread Douglas N Greve
Hi Paul, what version of FS are you running? What is your command line? What do you mean by "shifted"? In the images you sent, what exactly is the problem you have circled? When you run tkmedit, are you specifying a color table that includes your new areas? doug On 04/08/2013 10:02 AM, Paul Be