Re: [Freesurfer] mri_deface fails on pediatric brain

2019-08-04 Thread Bruce Fischl
Hi Soichi mri_deface isn't really supported anymore, but if you upload a subject that fails I'll take a look. I would have thought in the ABCD subject age range it would work cheers Bruce On Sat, 3 Aug 2019, Soichi Hayashi wrote: External Email - Use Caution Hello. We

[Freesurfer] mri_deface fails on pediatric brain

2019-08-03 Thread Soichi Hayashi
External Email - Use Caution Hello. We are running mri_deface on subjects from ABCD (Adolescent Brain Cognitive Development) study and many of the subjects are failing on mri_deface. $ mri_deface t1.nii.gz > $FREESURFER_HOME/average/talairach_mixed_with_skull.gca >