Hi Martin,
Now I move onto the mri_glmfit step (still within the two stage method).
The on-line tutorial for doing this is not very clear.
The output of the first stage is stored in the subject-template (base),
already in fsaverage space. Simply replace the thickness file with your
Hi Keith,
you are right, the lh.long.thickness-spc.fwhm5.fsaverage.mgh in each
base folder is only for that subject. You process this the same way as
you'd usually do thickness in a cross sectional analysis. Except you can
skip the mris_prepoc step (as everyting is mapped to fsaverage and
