Re: [Freesurfer] Optseq Help
Ok, thanks for all your help! Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Thursday, December 21, 2017 2:48:46 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help Yes, I sent the linux version, but it looks like the version you are using is up to date On 12/21/2017 02:25 PM, Dirks, Bryce Ronald Alan wrote: > > Ok thanks. I tried to use the new version of optseq2 you sent, but I > keep getting a cannot execute binary file even after I have made it > executable. I am using it on a macOS Sierra 10.12.6. Is it possible > that the version you sent is not compatible with this OS version and > if it is not do you have a different updated version? > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C43428a266dfe4df7c7cb08d548abe4ed%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494825489729671=CHbsmF0D1tIEP6y5vuFaTe%2B4bORR3J4mVjMsJVVNqPA%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Thursday, December 21, 2017 1:23:11 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > 30 is probably ok but you could extend to 34 > > > On 12/21/2017 12:21 PM, Dirks, Bryce Ronald Alan wrote: > > > > Ok, thank you. I have one more question. For our 12 sec trials what > > should be the size of our psywindow. We want a window big enough that > > it captures the entire HRF. What would be the ideal setting to do > > that? I originally had it set to psywindow= 0 30 1, but would that be > > optimal capture the entire HRF or should it be changed? > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce6aed5c2bf0544c52bf008d5489ff5cf%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494774274363724=%2FATnzhp5BOdqtWTD458uqW24FQrAwO%2BXPqv3UuncMHE%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Thursday, December 21, 2017 11:43:38 AM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > Oh, the message about some of the the schedules being ill-conditioned is > > not an error, it is just letting the user know the proportion of > > randomly selected schedules were bad. In this case, you have quite a > > large number. It should drop when you increase the ntp > > > > > > On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > > > > > That is the complete terminal and thank you for your help! > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C2391bdc376564bf2f35408d5489208b3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494714620049555=ot0lWBfrb0iRMZ6b0TxuLLPaT5s3kKwF0AwcBJAryjk%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu> > > > *Sent:* Wednesday, December 20, 2017 6:38:48 PM > > > *To:* freesurfer@nmr.mgh.harvard.edu > > > *Subject:* Re: [Freesurfer] Optseq Help > > > send me the full term
Re: [Freesurfer] Optseq Help
Ok thanks. I tried to use the new version of optseq2 you sent, but I keep getting a cannot execute binary file even after I have made it executable. I am using it on a macOS Sierra 10.12.6. Is it possible that the version you sent is not compatible with this OS version and if it is not do you have a different updated version? Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Thursday, December 21, 2017 1:23:11 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help 30 is probably ok but you could extend to 34 On 12/21/2017 12:21 PM, Dirks, Bryce Ronald Alan wrote: > > Ok, thank you. I have one more question. For our 12 sec trials what > should be the size of our psywindow. We want a window big enough that > it captures the entire HRF. What would be the ideal setting to do > that? I originally had it set to psywindow= 0 30 1, but would that be > optimal capture the entire HRF or should it be changed? > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce6aed5c2bf0544c52bf008d5489ff5cf%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494774274363724=%2FATnzhp5BOdqtWTD458uqW24FQrAwO%2BXPqv3UuncMHE%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Thursday, December 21, 2017 11:43:38 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > Oh, the message about some of the the schedules being ill-conditioned is > not an error, it is just letting the user know the proportion of > randomly selected schedules were bad. In this case, you have quite a > large number. It should drop when you increase the ntp > > > On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > > > That is the complete terminal and thank you for your help! > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C2391bdc376564bf2f35408d5489208b3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494714620049555=ot0lWBfrb0iRMZ6b0TxuLLPaT5s3kKwF0AwcBJAryjk%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Wednesday, December 20, 2017 6:38:48 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > send me the full terminal output that includes the error > > > > > > On 12/20/2017 05:05 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Cbc30d90ba26d41b342f508d54802dacc%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494099467047925=iJ9ZPDXEPh7iHgqAUo86dOjilT08bKfJwyVSystzN6c%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu> > > > *Sent:* Wednesday, December 20, 2017 4:44:40 PM > > > *To:* freesurfer@nmr.mgh.harvard.edu > > > *Subject:* Re: [Freesurfer] Optseq Help > > > Run > > > > > > optseq2 --all-info > > > > > > > > > and send the result. I think you
Re: [Freesurfer] Optseq Help
30 is probably ok but you could extend to 34 On 12/21/2017 12:21 PM, Dirks, Bryce Ronald Alan wrote: > > Ok, thank you. I have one more question. For our 12 sec trials what > should be the size of our psywindow. We want a window big enough that > it captures the entire HRF. What would be the ideal setting to do > that? I originally had it set to psywindow= 0 30 1, but would that be > optimal capture the entire HRF or should it be changed? > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Thursday, December 21, 2017 11:43:38 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > Oh, the message about some of the the schedules being ill-conditioned is > not an error, it is just letting the user know the proportion of > randomly selected schedules were bad. In this case, you have quite a > large number. It should drop when you increase the ntp > > > On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > > > That is the complete terminal and thank you for your help! > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C2391bdc376564bf2f35408d5489208b3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494714620049555=ot0lWBfrb0iRMZ6b0TxuLLPaT5s3kKwF0AwcBJAryjk%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Wednesday, December 20, 2017 6:38:48 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > send me the full terminal output that includes the error > > > > > > On 12/20/2017 05:05 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Cbc30d90ba26d41b342f508d54802dacc%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494099467047925=iJ9ZPDXEPh7iHgqAUo86dOjilT08bKfJwyVSystzN6c%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu> > > > *Sent:* Wednesday, December 20, 2017 4:44:40 PM > > > *To:* freesurfer@nmr.mgh.harvard.edu > > > *Subject:* Re: [Freesurfer] Optseq Help > > > Run > > > > > > optseq2 --all-info > > > > > > > > > and send the result. I think you may be using an older version. > I've put > > > the newest version here > > > > > > > > > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Fsafelinks%2Fgreve%2Foptseq2=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=P%2BtuLgRJMQBV84JfGC6ZyfHtfDFL2QHUKCxiQQ52OBY%3D=0 > > > > > > > > > > > > On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > > > > > > > > > > > > > > > > > > > *Bryce Dirks* > > > > Research Associate > > > > Brain Connectivity and Cognition Laboratory > > > > Department of Psychology > > > > University of Miami > > > > Website: > > > > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%
Re: [Freesurfer] Optseq Help
Ok, thank you. I have one more question. For our 12 sec trials what should be the size of our psywindow. We want a window big enough that it captures the entire HRF. What would be the ideal setting to do that? I originally had it set to psywindow= 0 30 1, but would that be optimal capture the entire HRF or should it be changed? Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Thursday, December 21, 2017 11:43:38 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help Oh, the message about some of the the schedules being ill-conditioned is not an error, it is just letting the user know the proportion of randomly selected schedules were bad. In this case, you have quite a large number. It should drop when you increase the ntp On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > That is the complete terminal and thank you for your help! > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C2391bdc376564bf2f35408d5489208b3%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494714620049555=ot0lWBfrb0iRMZ6b0TxuLLPaT5s3kKwF0AwcBJAryjk%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Wednesday, December 20, 2017 6:38:48 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > send me the full terminal output that includes the error > > > On 12/20/2017 05:05 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Cbc30d90ba26d41b342f508d54802dacc%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494099467047925=iJ9ZPDXEPh7iHgqAUo86dOjilT08bKfJwyVSystzN6c%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Wednesday, December 20, 2017 4:44:40 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > Run > > > > optseq2 --all-info > > > > > > and send the result. I think you may be using an older version. I've put > > the newest version here > > > > > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Fsafelinks%2Fgreve%2Foptseq2=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=P%2BtuLgRJMQBV84JfGC6ZyfHtfDFL2QHUKCxiQQ52OBY%3D=0 > > > > > > > > On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > > > > > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=35BDgdXblY0KRy07bnFYxqdfwI5NCOkCL%2BcwbiPnBbo%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu> > > > *Sent:* Wednesday, December 20, 2017 3:40:48 PM > > > *To:* freesurfer@nmr.mgh.harvard.edu > >
Re: [Freesurfer] Optseq Help
Oh, the message about some of the the schedules being ill-conditioned is not an error, it is just letting the user know the proportion of randomly selected schedules were bad. In this case, you have quite a large number. It should drop when you increase the ntp On 12/21/2017 10:29 AM, Dirks, Bryce Ronald Alan wrote: > > That is the complete terminal and thank you for your help! > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Wednesday, December 20, 2017 6:38:48 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > send me the full terminal output that includes the error > > > On 12/20/2017 05:05 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Cbc30d90ba26d41b342f508d54802dacc%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494099467047925=iJ9ZPDXEPh7iHgqAUo86dOjilT08bKfJwyVSystzN6c%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Wednesday, December 20, 2017 4:44:40 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > Run > > > > optseq2 --all-info > > > > > > and send the result. I think you may be using an older version. I've put > > the newest version here > > > > > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Fsafelinks%2Fgreve%2Foptseq2=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=P%2BtuLgRJMQBV84JfGC6ZyfHtfDFL2QHUKCxiQQ52OBY%3D=0 > > > > > > > > On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > > > > > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=35BDgdXblY0KRy07bnFYxqdfwI5NCOkCL%2BcwbiPnBbo%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu> > > > *Sent:* Wednesday, December 20, 2017 3:40:48 PM > > > *To:* freesurfer@nmr.mgh.harvard.edu > > > *Subject:* Re: [Freesurfer] Optseq Help > > > Can you send me the terminal output? I ran this command and did not > > > receive any errors using v6 > > > > > > optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev > > > control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 > > > > > > what version of FS are you running? > > > > > > > > > > > > On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > > > I also tried reducing the window and that removed the error. I also > > > > only get the error on a subset of the schedule so if we keep the > top 3 > > > > would they /not/ be ill-conditioned? > > > > > > > > > > > > > > > > * > > > > * > > > > *Bryce Dirks* > > > > Research Associate > > > > Brain Connectivity and Cognition Laboratory > > > > Depa
Re: [Freesurfer] Optseq Help
send me the full terminal output that includes the error On 12/20/2017 05:05 PM, Dirks, Bryce Ronald Alan wrote: > > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Wednesday, December 20, 2017 4:44:40 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > Run > > optseq2 --all-info > > > and send the result. I think you may be using an older version. I've put > the newest version here > > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Fsafelinks%2Fgreve%2Foptseq2=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=P%2BtuLgRJMQBV84JfGC6ZyfHtfDFL2QHUKCxiQQ52OBY%3D=0 > > > > On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=35BDgdXblY0KRy07bnFYxqdfwI5NCOkCL%2BcwbiPnBbo%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Wednesday, December 20, 2017 3:40:48 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > Can you send me the terminal output? I ran this command and did not > > receive any errors using v6 > > > > optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev > > control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 > > > > what version of FS are you running? > > > > > > > > On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > I also tried reducing the window and that removed the error. I also > > > only get the error on a subset of the schedule so if we keep the top 3 > > > would they /not/ be ill-conditioned? > > > > > > > > > > > > * > > > * > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* Dirks, Bryce Ronald Alan > > > *Sent:* Wednesday, December 20, 2017 11:44:03 AM > > > *To:* freesurfer@nmr.mgh.harvard.edu > > > *Subject:* Re: [Freesurfer] Optseq Help > > > > > > I added 120 to the ntp make ntp=300, but still got the same error. I > > > also tried running a ntp=360 and got the same ill-condtioned > statement. > > > > > > > > > *Bryce Dirks* > > > Research Associate > > > Brain Connectivity and Cognition Laboratory > > > Department of Psychology > > > University of Miami > > > Website: > > > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > > Phone:_ (305)284-3286_ > > > > > > > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.har
Re: [Freesurfer] Optseq Help
[cid:e2004983-1784-4ecf-b0f3-1de7ad1c13d0] Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Wednesday, December 20, 2017 4:44:40 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help Run optseq2 --all-info and send the result. I think you may be using an older version. I've put the newest version here https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Fsafelinks%2Fgreve%2Foptseq2=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=P%2BtuLgRJMQBV84JfGC6ZyfHtfDFL2QHUKCxiQQ52OBY%3D=0 On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C65c4c935aaba4abb80ce08d547f2eb12%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636494031019648605=35BDgdXblY0KRy07bnFYxqdfwI5NCOkCL%2BcwbiPnBbo%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Wednesday, December 20, 2017 3:40:48 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > Can you send me the terminal output? I ran this command and did not > receive any errors using v6 > > optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev > control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 > > what version of FS are you running? > > > > On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > > > I also tried reducing the window and that removed the error. I also > > only get the error on a subset of the schedule so if we keep the top 3 > > would they /not/ be ill-conditioned? > > > > > > > > * > > * > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* Dirks, Bryce Ronald Alan > > *Sent:* Wednesday, December 20, 2017 11:44:03 AM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > > > I added 120 to the ntp make ntp=300, but still got the same error. I > > also tried running a ntp=360 and got the same ill-condtioned statement. > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Tuesday, December 19, 2017 6:21:31 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > You need to include some time for fixation. Ie, your total run time is > > 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need > > to increase the length of the fmRI run (or reduce the total number of > > stimuli). Usually I include as much fixation as any other condition. In > > this case, that would be 12*10=120 sec. So try adding 120 sec
Re: [Freesurfer] Optseq Help
Run optseq2 --all-info and send the result. I think you may be using an older version. I've put the newest version here https://gate.nmr.mgh.harvard.edu/safelinks/greve/optseq2 On 12/20/2017 04:26 PM, Dirks, Bryce Ronald Alan wrote: > > We are not using freesurfer, but just the optseq2 unix script. > > > > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Wednesday, December 20, 2017 3:40:48 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > Can you send me the terminal output? I ran this command and did not > receive any errors using v6 > > optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev > control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 > > what version of FS are you running? > > > > On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > > > I also tried reducing the window and that removed the error. I also > > only get the error on a subset of the schedule so if we keep the top 3 > > would they /not/ be ill-conditioned? > > > > > > > > * > > * > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > ---- > > *From:* Dirks, Bryce Ronald Alan > > *Sent:* Wednesday, December 20, 2017 11:44:03 AM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > > > I added 120 to the ntp make ntp=300, but still got the same error. I > > also tried running a ntp=360 and got the same ill-condtioned statement. > > > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > ---- > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> > > *Sent:* Tuesday, December 19, 2017 6:21:31 PM > > *To:* freesurfer@nmr.mgh.harvard.edu > > *Subject:* Re: [Freesurfer] Optseq Help > > You need to include some time for fixation. Ie, your total run time is > > 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need > > to increase the length of the fmRI run (or reduce the total number of > > stimuli). Usually I include as much fixation as any other condition. In > > this case, that would be 12*10=120 sec. So try adding 120 sec (ie, > > incrase --ntp 180) and re-run > > > > > > On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > > > > > Hello, > > > > > > I am trying to create the optseq for a cognitive flexibility > > > experiment we are conducting. It consists of 10 flexibility, 10 > > > control, and 10 fixation trials. The flexibility and control trials > > > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > > > are not time-locked to our TR. We are also unsure how long our > > > response window should be given our rather long trial duration (12s). > > > The code below is what I have made to try to do this and I keep > > > getting that the schedules were ill-conditioned. Any information on > > > how to resolve this error is appreciated! > > > > > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 >
Re: [Freesurfer] Optseq Help
We are not using freesurfer, but just the optseq2 unix script. [cid:4d2690e2-cc07-4403-94e9-37c5ce6441f7] Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Wednesday, December 20, 2017 3:40:48 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help Can you send me the terminal output? I ran this command and did not receive any errors using v6 optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 what version of FS are you running? On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > I also tried reducing the window and that removed the error. I also > only get the error on a subset of the schedule so if we keep the top 3 > would they /not/ be ill-conditioned? > > > > * > * > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* Dirks, Bryce Ronald Alan > *Sent:* Wednesday, December 20, 2017 11:44:03 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > > I added 120 to the ntp make ntp=300, but still got the same error. I > also tried running a ntp=360 and got the same ill-condtioned statement. > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7Ce895fb97ad7d43cec71808d547ea050d%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493992801342342=2cVt5PsoucM7H3%2FILIMY8v4sPW0zlZPFjhgd8vYG7g4%3D=0 > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Tuesday, December 19, 2017 6:21:31 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > You need to include some time for fixation. Ie, your total run time is > 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need > to increase the length of the fmRI run (or reduce the total number of > stimuli). Usually I include as much fixation as any other condition. In > this case, that would be 12*10=120 sec. So try adding 120 sec (ie, > incrase --ntp 180) and re-run > > > On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > > > Hello, > > > > I am trying to create the optseq for a cognitive flexibility > > experiment we are conducting. It consists of 10 flexibility, 10 > > control, and 10 fixation trials. The flexibility and control trials > > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > > are not time-locked to our TR. We are also unsure how long our > > response window should be given our rather long trial duration (12s). > > The code below is what I have made to try to do this and I keep > > getting that the schedules were ill-conditioned. Any information on > > how to resolve this error is appreciated! > > > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 > > --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1/ > > > > // > > > > Thank you, > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=nNf5Fj9zXwtyGwSAu9Fv5XFUNJmDpwaYe8t0DeyIwF4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > ___ > > Freesurfer mailing list > > Freesurfer@nmr
Re: [Freesurfer] Optseq Help
Can you send me the terminal output? I ran this command and did not receive any errors using v6 optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 what version of FS are you running? On 12/20/2017 02:29 PM, Dirks, Bryce Ronald Alan wrote: > > I also tried reducing the window and that removed the error. I also > only get the error on a subset of the schedule so if we keep the top 3 > would they /not/ be ill-conditioned? > > > > * > * > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* Dirks, Bryce Ronald Alan > *Sent:* Wednesday, December 20, 2017 11:44:03 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > > I added 120 to the ntp make ntp=300, but still got the same error. I > also tried running a ntp=360 and got the same ill-condtioned statement. > > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > *Sent:* Tuesday, December 19, 2017 6:21:31 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Optseq Help > You need to include some time for fixation. Ie, your total run time is > 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need > to increase the length of the fmRI run (or reduce the total number of > stimuli). Usually I include as much fixation as any other condition. In > this case, that would be 12*10=120 sec. So try adding 120 sec (ie, > incrase --ntp 180) and re-run > > > On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > > > Hello, > > > > I am trying to create the optseq for a cognitive flexibility > > experiment we are conducting. It consists of 10 flexibility, 10 > > control, and 10 fixation trials. The flexibility and control trials > > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > > are not time-locked to our TR. We are also unsure how long our > > response window should be given our rather long trial duration (12s). > > The code below is what I have made to try to do this and I keep > > getting that the schedules were ill-conditioned. Any information on > > how to resolve this error is appreciated! > > > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 > > --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1/ > > > > // > > > > Thank you, > > > > *Bryce Dirks* > > Research Associate > > Brain Connectivity and Cognition Laboratory > > Department of Psychology > > University of Miami > > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=nNf5Fj9zXwtyGwSAu9Fv5XFUNJmDpwaYe8t0DeyIwF4%3D=0 > > Phone:_ (305)284-3286_ > > > > > > > > > > ___ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=fSxKgs2875NMsNRDDpEm4A3edizRkTK16%2BdRtSRGi9g%3D=0 > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Ffiledrop2=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=Po9xHg28xXgZ%2Fsl18qFb2c4SQUL5vJY59lEdS7Y0Jj0%3D=0 > https://na01.safelinks.protection.outlook.com/?url=www.nmr.mgh.harvard.edu%2Ffacility%2Ffiledrop%2Findex.html=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C63649322551054188
Re: [Freesurfer] Optseq Help
I also tried reducing the window and that removed the error. I also only get the error on a subset of the schedule so if we keep the top 3 would they not be ill-conditioned? [cid:9db61702-db91-46df-b78c-40c3b3455e2f] Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: Dirks, Bryce Ronald Alan Sent: Wednesday, December 20, 2017 11:44:03 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help I added 120 to the ntp make ntp=300, but still got the same error. I also tried running a ntp=360 and got the same ill-condtioned statement. Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Tuesday, December 19, 2017 6:21:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help You need to include some time for fixation. Ie, your total run time is 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need to increase the length of the fmRI run (or reduce the total number of stimuli). Usually I include as much fixation as any other condition. In this case, that would be 12*10=120 sec. So try adding 120 sec (ie, incrase --ntp 180) and re-run On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > Hello, > > I am trying to create the optseq for a cognitive flexibility > experiment we are conducting. It consists of 10 flexibility, 10 > control, and 10 fixation trials. The flexibility and control trials > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > are not time-locked to our TR. We are also unsure how long our > response window should be given our rather long trial duration (12s). > The code below is what I have made to try to do this and I keep > getting that the schedules were ill-conditioned. Any information on > how to resolve this error is appreciated! > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 > --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1/ > > // > > Thank you, > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=nNf5Fj9zXwtyGwSAu9Fv5XFUNJmDpwaYe8t0DeyIwF4%3D=0 > Phone:_ (305)284-3286_ > > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=fSxKgs2875NMsNRDDpEm4A3edizRkTK16%2BdRtSRGi9g%3D=0 -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Ffiledrop2=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=Po9xHg28xXgZ%2Fsl18qFb2c4SQUL5vJY59lEdS7Y0Jj0%3D=0 https://na01.safelinks.protection.outlook.com/?url=www.nmr.mgh.harvard.edu%2Ffacility%2Ffiledrop%2Findex.html=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=1UeXmNO6h%2FKwXjgBrKAmoQOado%2BW5F21yNrlJK81psc%3D=0 Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=fSxKgs2875NMsNRDDpEm4A3edizRkTK16%2BdRtSRGi9g%3D=0 The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline=02%7C0
Re: [Freesurfer] Optseq Help
I added 120 to the ntp make ntp=300, but still got the same error. I also tried running a ntp=360 and got the same ill-condtioned statement. Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Tuesday, December 19, 2017 6:21:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Optseq Help You need to include some time for fixation. Ie, your total run time is 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need to increase the length of the fmRI run (or reduce the total number of stimuli). Usually I include as much fixation as any other condition. In this case, that would be 12*10=120 sec. So try adding 120 sec (ie, incrase --ntp 180) and re-run On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > Hello, > > I am trying to create the optseq for a cognitive flexibility > experiment we are conducting. It consists of 10 flexibility, 10 > control, and 10 fixation trials. The flexibility and control trials > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > are not time-locked to our TR. We are also unsure how long our > response window should be given our rather long trial duration (12s). > The code below is what I have made to try to do this and I keep > getting that the schedules were ill-conditioned. Any information on > how to resolve this error is appreciated! > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 > --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1/ > > // > > Thank you, > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.psy.miami.edu%2Fbccl%2F=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=nNf5Fj9zXwtyGwSAu9Fv5XFUNJmDpwaYe8t0DeyIwF4%3D=0 > Phone:_ (305)284-3286_ > > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=fSxKgs2875NMsNRDDpEm4A3edizRkTK16%2BdRtSRGi9g%3D=0 -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Ffiledrop2=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=Po9xHg28xXgZ%2Fsl18qFb2c4SQUL5vJY59lEdS7Y0Jj0%3D=0 https://na01.safelinks.protection.outlook.com/?url=www.nmr.mgh.harvard.edu%2Ffacility%2Ffiledrop%2Findex.html=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=1UeXmNO6h%2FKwXjgBrKAmoQOado%2BW5F21yNrlJK81psc%3D=0 Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=fSxKgs2875NMsNRDDpEm4A3edizRkTK16%2BdRtSRGi9g%3D=0 The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline=02%7C01%7Cbrd47%40miami.edu%7C4536742e42f64289da3308d547375f81%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C636493225510541884=V8NCrEqLIkEyHtlLSmUaoJmjbF55EbLjNeXeXzeDMRs%3D=0 . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was s
Re: [Freesurfer] Optseq Help
You need to include some time for fixation. Ie, your total run time is 180*2=360 sec. The total stimulation time is 12*10*3 = 360 sec. You need to increase the length of the fmRI run (or reduce the total number of stimuli). Usually I include as much fixation as any other condition. In this case, that would be 12*10=120 sec. So try adding 120 sec (ie, incrase --ntp 180) and re-run On 12/19/2017 05:21 PM, Dirks, Bryce Ronald Alan wrote: > > Hello, > > I am trying to create the optseq for a cognitive flexibility > experiment we are conducting. It consists of 10 flexibility, 10 > control, and 10 fixation trials. The flexibility and control trials > are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets > are not time-locked to our TR. We are also unsure how long our > response window should be given our rather long trial duration (12s). > The code below is what I have made to try to do this and I keep > getting that the schedules were ill-conditioned. Any information on > how to resolve this error is appreciated! > > /./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 > --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1/ > > // > > Thank you, > > *Bryce Dirks* > Research Associate > Brain Connectivity and Cognition Laboratory > Department of Psychology > University of Miami > Website: http://www.psy.miami.edu/bccl/ > Phone:_ (305)284-3286_ > > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Optseq Help
Hello, I am trying to create the optseq for a cognitive flexibility experiment we are conducting. It consists of 10 flexibility, 10 control, and 10 fixation trials. The flexibility and control trials are 12 seconds long. Our TR= 2s. We want to ensure our trial onsets are not time-locked to our TR. We are also unsure how long our response window should be given our rather long trial duration (12s). The code below is what I have made to try to do this and I keep getting that the schedules were ill-conditioned. Any information on how to resolve this error is appreciated! ./optseq2 --ntp 180 --tr 2 --psdwin 0 30 1 --ev flexibility 12 10 --ev control 12 10 --nsearch 1 --nkeep 3 --o cFIST_10trials8s_Run1 Thank you, Bryce Dirks Research Associate Brain Connectivity and Cognition Laboratory Department of Psychology University of Miami Website: http://www.psy.miami.edu/bccl/ Phone: (305)284-3286 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] optseq help
The command line looks ok. The low efficiency is coming from the low number of events per event type. On 9/27/16 9:52 AM, Alexandre Obert wrote: Dear all, I would like to optimize my design by inserting null-events between my trials (in order to better catch the HRF shape with reasonable duration of the experiment) using optseq. I'm not very familiar with this useful tool and I wonder if you could check my setup? Here my design : I've got 12 trials per run (2 runs per participants). Each of my trial is 34s long and is composed as follow : -An instruction reminder screen of 4s -A video stimulus of 12s to 20s. This screen will be my "stimulus of interest". It's followed by a fixation cross in such a way that their cumulated durations will not exceed 20s -A question about the video followed by a fixation cross in such a way that their cumulated durations will not exceed 20s. -A jitter (a fixation cross), determined by optseq It's a 2 (A1; A2) x2 (B1; B2) design and I'm interested in these following contrasts: A1 vs A2 B1 vs B2 (The interaction contrast will have an exploratory value in my analysis.) In order to determine the jitters and the order of the stimuli, I set the optseq as follow: --ntp 210\ --tr 2\ --psdwin 0 40 1\ --ev evA1B1 34 3\ --ev evA1B2 34 3\ --ev evA2B1 34 3\ --ev evA2B2 34 3\ --ecv 1 1 -1 -1\ --evc 1 -1 1 -1\ --nsearch 1\ --nkeep 3 I'm not very confident with my setup and if it's correct? I also wonder if I correctly set the ev durations and the psdwin. The stimulus of interest is the video but I set the ev using the trial duration in order to obtain ITI jitters and psdwin to the trial duration. This results in a poor efficiency and I wonder if it's possible to better optimized this design... Any help will be appreciated... Regards, Alexandre ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] optseq help
Dear all, I would like to optimize my design by inserting null-events between my trials (in order to better catch the HRF shape with reasonable duration of the experiment) using optseq. I'm not very familiar with this useful tool and I wonder if you could check my setup? Here my design : I've got 12 trials per run (2 runs per participants). Each of my trial is 34s long and is composed as follow : -An instruction reminder screen of 4s -A video stimulus of 12s to 20s. This screen will be my "stimulus of interest". It's followed by a fixation cross in such a way that their cumulated durations will not exceed 20s -A question about the video followed by a fixation cross in such a way that their cumulated durations will not exceed 20s. -A jitter (a fixation cross), determined by optseq It's a 2 (A1; A2) x2 (B1; B2) design and I'm interested in these following contrasts: A1 vs A2 B1 vs B2 (The interaction contrast will have an exploratory value in my analysis.) In order to determine the jitters and the order of the stimuli, I set the optseq as follow: --ntp 210\ --tr 2\ --psdwin 0 40 1\ --ev evA1B1 34 3\ --ev evA1B2 34 3\ --ev evA2B1 34 3\ --ev evA2B2 34 3\ --ecv 1 1 -1 -1\ --evc 1 -1 1 -1\ --nsearch 1\ --nkeep 3 I'm not very confident with my setup and if it's correct? I also wonder if I correctly set the ev durations and the psdwin. The stimulus of interest is the video but I set the ev using the trial duration in order to obtain ITI jitters and psdwin to the trial duration. This results in a poor efficiency and I wonder if it's possible to better optimized this design... Any help will be appreciated... Regards, Alexandre ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] optseq help
Hello, I am trying to use the optseq command for 2 conditions of 30 trials each with TR = 2 optseq -ntp 120 -TR 2 -npercond 30 30 -tpercond 3 3 -nsessions 3 -label critical independent -o TestFile I get the following result: -0.0001 3.000 critical 4.0001 3.000 critical 8.0000 2.000independent The program adds an extra 1 second at the end of each trial. I want each trial dureation as 3 seconds. This is the true even when when I don't give the option -TR. ( I am assuming the default TR is taken as 2 by the program). I guess the program tries to start to each trial at mutiples of TR. Is this true? I want my trials not to have any intervals between trials. I get my desired results by lying to the program that the TR is 1. optseq -ntp 180 -TR 1 -npercond 30 30 -tpercond 3 3 -nsessions 3 -label critical independent -o TestFilegives the results as: -0.0001 3.000 critical 3.0001 3.000 critical 6.0001 3.000 independent Is this the right way to go? Thanks. Mithra. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] optseq help
Have you tried using optseq2? Haven't used optseq in a long time:). Mithra wrote: Hello, I am trying to use the optseq command for 2 conditions of 30 trials each with TR = 2 optseq -ntp 120 -TR 2 -npercond 30 30 -tpercond 3 3 -nsessions 3 -label critical independent -o TestFile I get the following result: -0.0001 3.000 critical 4.0001 3.000 critical 8.0000 2.000independent The program adds an extra 1 second at the end of each trial. I want each trial dureation as 3 seconds. This is the true even when when I don't give the option -TR. ( I am assuming the default TR is taken as 2 by the program). I guess the program tries to start to each trial at mutiples of TR. Is this true? I want my trials not to have any intervals between trials. I get my desired results by lying to the program that the TR is 1. optseq -ntp 180 -TR 1 -npercond 30 30 -tpercond 3 3 -nsessions 3 -label critical independent -o TestFilegives the results as: -0.0001 3.000 critical 3.0001 3.000 critical 6.0001 3.000 independent Is this the right way to go? Thanks. Mithra. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
