Re: [Freesurfer] recon-all exited w/errors

2014-01-05 Thread Bruce Fischl
Hi Katica what format was the input image to recon-all? Can you verify that tkmedit has the directions correct (that is what it labels as anterior is actually anatomically anterior, etc...). If so, then the talairach just failed and you will need to either try an alternative (like the MNI or

[Freesurfer] recon-all exited w/errors

2014-01-02 Thread Boric, Katica A.
Happy New Year freesuerfers! I run into this error while doing recon-all : ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0., pval=0. threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test,