You have specified both -surface and -native which conflict with each
other. In this case, it will use native space which forces it to use
per-session (no way to avoid this).
doug
On 03/29/2013 01:08 PM, SHAHIN NASR wrote:
Hi,
I used to run my mkanalysis-sess without indicating -per-run or
-per-session, assuming that when I have pre-processed my files with
-per-run flag then selxavg3-sess will do the same. But when I checked
the analysis.info http://analysis.info I noticed PerSession 1
which I think it means system will use per-session preprocessing. So,
this time I explicitly used -per-run in my mkanalysis-sess as below:
preproc-sess -s SubjId -per-run -fwhm 5 -fsd bold -fwhm 5 -surf self
rhlh
mkanalysis-sess -analysis Reward.rh -surface self rh -native -fwhm 5
-paradigm Conds.par -event-related -polyfit 2 -gammafit 2.25 1.25
-mcextreg -TR 2.000 -nconditions 7 -refeventdur .10 -fsd bold -per-run
-force
This time when I ran selxavg3-sess command I faced this error:
ERROR: cannot determine format of
/autofs/cluster/tootell/pitcairn/1/shahin/Reward/Subjects/limi1/bold/004/fmcpr.sm5
(MRIread)
Error in flac_customize (line 87)
mri = MRIread(fstem,1);
Error in fast_selxavg3 (line 65)
flac0 = flac_customize(flac0);
--
ERROR: fast_selxavg3() failed\n
As I checked my subjects directory I had these files in /bold/004/
directory:
fmcpr.nii.gz
fmcpr.sm5.self.rh.nii.gz
fmcpr.sm5.self.lh.nii.gz
Notably, if I drop that -per-run flag from my mkanalysis-sess then
system works without any problem. But then I am not sure whether I
have processed my data in per-run or per-session mode.
Any help will be appreciated
Regards
--
Shahin Nasr
PhD in Cognitive Neuroscience
Martinos Imaging Center, MGH
Harvard Medical School
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
