Hello Doug,
I am encountering the error below when running spmregister. Where do you
think is the issue? Thanks!
Best,
Marco
bash-4.1$ spmregister --mov $file.nii --s PBR_$subj --reg tmp.dat
--fsvol merged.lrrev
Log file is ./spmregister.log
Fri Jul 26 10:52:49 EDT 2013
--mov
Hi again,
interestingly, if I run the same command using the full fsvol path I get
the 'Disk quota exceeded' message... I wonder if even the message I wrote
you about in my previous email has something to do with disk space.
I will try free up some room and try spmregister again!
Marco
That probably just means that you have run out of space in the directory
you are running it from. Run
quota -v
to see
doug
On 7/26/13 11:27 AM, Marco Loggia wrote:
Hi again,
interestingly, if I run the same command using the full fsvol path I get
the 'Disk quota exceeded' message... I
what version of spm are you using? Look in your ~/matlab/startup.m file
to see. If you are using version 5 or less, then add --img
doug
On 7/26/13 11:19 AM, Marco Loggia wrote:
Hello Doug,
I am encountering the error below when running spmregister. Where do you
think is the issue? Thanks!
Hi Freesurfers,
I'm in the middle of coregistering a CT and MRI, and after running
spmregister --s MGXX_SurferOutput --mov ct.mgz --reg spm.reg.dat --fsvol orig
I get the error that orig.mgz is not found in COR or MGZ formats, but I have an
orig.mgz file in my folder. Any help on this would be
Make sure that there is an orig.mgz in $SUBJECTS_DIR/MGXX_SurferOutput/mri
Also, make sure to send the full terminal output
doug
On 03/28/2013 02:13 PM, Borzello, Mia wrote:
Hi Freesurfers,
I'm in the middle of coregistering a CT and MRI, and after running
spmregister --s MGXX_SurferOutput
Re: [Freesurfer] spmregister error
Douglas N Greve
Fri, 30 Jul 2010 09:58:18 -0700
Yes, that should work.
doug
Adam Nitenson wrote:
Hi Sandra,
I just had this same problem about a week ago. The solution
which
worked for me was adding the following line of text
all in the past
we
have been using spm2. It presents this error when running under my
name,
but not for other users.
Any help would be appreciated!
Thanks,
Chindhuri
Re: [Freesurfer] spmregister error
Douglas N
have been using spm2. It presents this error when running under my
name,
but not for other users.
Any help would be appreciated!
Thanks,
Chindhuri
Re: [Freesurfer] spmregister error
Douglas N Greve
Fri, 30 Jul 2010 09:58:18 -0700
Yes
,
but not for other users.
Any help would be appreciated!
Thanks,
Chindhuri
Re: [Freesurfer] spmregister error
Douglas N Greve
Fri, 30 Jul 2010 09:58:18 -0700
Yes, that should work.
doug
Adam Nitenson wrote:
Hi Sandra,
I just had this same problem
also not sure if we should be using spm5 since all in the past we
have been using spm2. It presents this error when running under my name,
but not for other users.
Any help would be appreciated!
Thanks,
Chindhuri
Re: [Freesurfer] spmregister
Hello,
When running spmregister-sess (standard environment was sourced) I
encountered this error:
ERROR: matlab exited with errors
ERROR: cannot find spm_coreg.m. Make sure that the SPM
package is in your matlab path (check ~/matlab/startup)
ERROR: spm_coreg
ERROR: spmregister failed
Hi Sandra,
I just had this same problem about a week ago. The solution which
worked for me was adding the following line of text into the startup.m
file in your matlab folder:
path(path,'/usr/pubsw/common/spm/spm5');
I'm not sure it matter exactly where you put it. I put mine in the last
Yes, that should work.
doug
Adam Nitenson wrote:
Hi Sandra,
I just had this same problem about a week ago. The solution which
worked for me was adding the following line of text into the startup.m
file in your matlab folder:
path(path,'/usr/pubsw/common/spm/spm5');
I'm not sure it
That seems to now work with those changes.
Thanks so much to Adam and Doug!
Sandra
Yes, that should work.
doug
Adam Nitenson wrote:
Hi Sandra,
I just had this same problem about a week ago. The solution which
worked for me was adding the following line of text into the startup.m
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