To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, Xiangzhen Kong bnu...@gmail.com wrote:
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage lh
?
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 11:18
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
There is no config that would do that. Fsaverage is somewhat unique in that
the lh and rh have
Do you mean the threshold?
min=2.0
max=5.0
Thanks!
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 20:57
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: Re: [Freesurfer] tksurfer display problem
sorry, I didn't notice that. What were your min and max set to?
On Fri, 28
Jun
: Bruce Fischl
Date: 2013-06-28 20:57
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: Re: [Freesurfer] tksurfer display problem
sorry, I didn't notice that. What were your min and max set to?
On Fri, 28
Jun 2013, Xiangzhen Kong wrote:
Thanks very much.
Another problem, do you know why the color bar
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 21:56
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
can you resend the image? You don't have the invert button clicked, do
you?
On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Do you mean
: [Freesurfer] tksurfer display problem
can you resend the image? You don't have the invert button clicked, do
you?
On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Do you mean the threshold?
min=2.0
max=5.0
Thanks
像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 21:56
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
can you resend the image? You don't have the invert button clicked, do
you?
On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Do you mean
in centos5.7)
PS: tkmedit works well with volumetric data. And freeview also works well.
【小孔成像】http://www.conxz.net
From: Bruce Fischl
Date: 2013-06-28 22:29
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: Re: [Freesurfer] tksurfer display problem
it's on the configure overlay window, but it wouldn't
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage lh inflated -overlay ./fwhm10lh/c1.contrast/sig.mgh
That is, I want to display the result of the left hemi.
However, to my surprise, the plot seems like on the right hemi of the brain.
In addition, the color bar
Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, Xiangzhen Kong bnu...@gmail.com wrote:
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage lh inflated -overlay ./fwhm10lh/c1.contrast/sig.mgh
That is, I want to display
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, Xiangzhen Kong bnu...@gmail.com wrote:
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage
To: Xiangzhen Kong
CC: freesurfer
Subject: Re: [Freesurfer] tksurfer display problem
Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, Xiangzhen Kong bnu...@gmail.com wrote:
Hi all.
I want to display a result with tksurfer. The cmd is here:
tksurfer fsaverage
Hello again,
After a system reboot, I am seeing these messages when trying to open
tkmedit or tksurfer:
Xlib: extension GLX missing on display :0.0.
GLUT: Fatal Error in tkmedit.bin: OpenGL GLX extension not supported by
display: :0.0
I've searched around, and seen that changing nv to nvidia
what is the version of your driver? ie
cat /proc/driver/nvidia/version
the latest is around 260.19.12
the problem you see is something we've seen with old nvidia drivers,
whereby updating the driver has fixed the problem. not sure why this
would just happen now for you.
to update (must be
Hello, Mr. Watson,
I had the same problem with ATI videocard on 64-bit CentOS 5.5. It was
solved after installation of last Catalyst driver (After disabling
SELinux: http://www.crypt.gen.nz/selinux/disable_selinux.html.) - ***I
am not quite sure which driver you should use with nvidia. I
I d/l'ed the new driver, and it now works. Thanks.
Chris
Nick Schmansky wrote:
what is the version of your driver? ie
cat /proc/driver/nvidia/version
the latest is around 260.19.12
the problem you see is something we've seen with old nvidia drivers,
whereby updating the driver has fixed
Hi, when trying to look at surfaces in tksurfer, all I see is a small
part of the data in the posterior of the brain (see attached for
example). There are no errors on the command line when I run tksurfer.
This only started happening very recently. Here's some system info:
(CentOS 5.5, 64-bit;
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